Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004424A_C01 KMC004424A_c01
(666 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL09733.1| At1g76160/T23E18_10 [Arabidopsis thaliana] 206 3e-52
ref|NP_177743.1| pectinesterase (pectin methylesterase), putativ... 206 3e-52
gb|AAM97070.1| pectinesterase, putative [Arabidopsis thaliana] g... 204 1e-51
ref|NP_195555.2| pectinesterase (pectin methylesterase), putativ... 199 4e-50
pir||T05670 pollen-specific protein homolog F22I13.190 - Arabido... 199 4e-50
>gb|AAL09733.1| At1g76160/T23E18_10 [Arabidopsis thaliana]
Length = 541
Score = 206 bits (523), Expect = 3e-52
Identities = 92/117 (78%), Positives = 105/117 (89%)
Frame = -3
Query: 664 FQNHESIVQSYHIDGYSFWVVGMDGGEWTPASRNEYNLIDAVSRSTTQVYPKSWTAIYMA 485
F+N E IVQS+H+DGYSFWVVGMDGG+W+P SRNEYNL DAV+R T QVYP SWTAI +A
Sbjct: 424 FENSEDIVQSWHLDGYSFWVVGMDGGQWSPDSRNEYNLRDAVARCTVQVYPSSWTAILIA 483
Query: 484 LDNVGMWNIRSGFWARQYLGQQFYLRVYSPVGSIRDEYPIPKNALLCGKAAGRATRP 314
LDNVGMWN+RS FWARQYLGQQ YLRVY+P S+RDEYPIPKNALLCG+A+GR+TRP
Sbjct: 484 LDNVGMWNLRSEFWARQYLGQQLYLRVYTPSTSLRDEYPIPKNALLCGRASGRSTRP 540
>ref|NP_177743.1| pectinesterase (pectin methylesterase), putative; protein id:
At1g76160.1, supported by cDNA: gi_15982770 [Arabidopsis
thaliana] gi|25285549|pir||E96789 protein T23E18.10
[imported] - Arabidopsis thaliana
gi|6573725|gb|AAF17645.1|AC009978_21 T23E18.10
[Arabidopsis thaliana]
Length = 541
Score = 206 bits (523), Expect = 3e-52
Identities = 92/117 (78%), Positives = 105/117 (89%)
Frame = -3
Query: 664 FQNHESIVQSYHIDGYSFWVVGMDGGEWTPASRNEYNLIDAVSRSTTQVYPKSWTAIYMA 485
F+N E IVQS+H+DGYSFWVVGMDGG+W+P SRNEYNL DAV+R T QVYP SWTAI +A
Sbjct: 424 FENSEDIVQSWHLDGYSFWVVGMDGGQWSPDSRNEYNLRDAVARCTVQVYPSSWTAILIA 483
Query: 484 LDNVGMWNIRSGFWARQYLGQQFYLRVYSPVGSIRDEYPIPKNALLCGKAAGRATRP 314
LDNVGMWN+RS FWARQYLGQQ YLRVY+P S+RDEYPIPKNALLCG+A+GR+TRP
Sbjct: 484 LDNVGMWNLRSEFWARQYLGQQLYLRVYTPSTSLRDEYPIPKNALLCGRASGRSTRP 540
>gb|AAM97070.1| pectinesterase, putative [Arabidopsis thaliana]
gi|23198038|gb|AAN15546.1| pectinesterase, putative
[Arabidopsis thaliana]
Length = 541
Score = 204 bits (518), Expect = 1e-51
Identities = 91/117 (77%), Positives = 104/117 (88%)
Frame = -3
Query: 664 FQNHESIVQSYHIDGYSFWVVGMDGGEWTPASRNEYNLIDAVSRSTTQVYPKSWTAIYMA 485
F+N E IVQS+H+DGYSFWVVGMDGG+W+P SRNEYNL DAV+R T QVYP SWTAI +A
Sbjct: 424 FENSEDIVQSWHLDGYSFWVVGMDGGQWSPDSRNEYNLRDAVARCTVQVYPSSWTAILIA 483
Query: 484 LDNVGMWNIRSGFWARQYLGQQFYLRVYSPVGSIRDEYPIPKNALLCGKAAGRATRP 314
LDNVGMWN+R FWARQYLGQQ YLRVY+P S+RDEYPIPKNALLCG+A+GR+TRP
Sbjct: 484 LDNVGMWNLRPEFWARQYLGQQLYLRVYTPSTSLRDEYPIPKNALLCGRASGRSTRP 540
>ref|NP_195555.2| pectinesterase (pectin methylesterase), putative; protein id:
At4g38420.1, supported by cDNA: gi_18176391, supported
by cDNA: gi_20465520 [Arabidopsis thaliana]
gi|18176392|gb|AAL60036.1| putative pectinesterase
[Arabidopsis thaliana] gi|20465521|gb|AAM20243.1|
putative pectinesterase [Arabidopsis thaliana]
Length = 549
Score = 199 bits (505), Expect = 4e-50
Identities = 89/117 (76%), Positives = 102/117 (87%)
Frame = -3
Query: 664 FQNHESIVQSYHIDGYSFWVVGMDGGEWTPASRNEYNLIDAVSRSTTQVYPKSWTAIYMA 485
FQN E IVQSYH+DGYSFWVVG D G W+ ASR EYNL DA+SRSTTQVYP+SWTA+Y+A
Sbjct: 433 FQNREKIVQSYHLDGYSFWVVGTDRGTWSKASRREYNLRDAISRSTTQVYPESWTAVYVA 492
Query: 484 LDNVGMWNIRSGFWARQYLGQQFYLRVYSPVGSIRDEYPIPKNALLCGKAAGRATRP 314
LDNVGMWN+RS +WARQYLGQQFYLRVYSP S+RDEY +PKNALLCG+A+ + T P
Sbjct: 493 LDNVGMWNLRSEYWARQYLGQQFYLRVYSPTHSLRDEYLLPKNALLCGRASNKHTTP 549
>pir||T05670 pollen-specific protein homolog F22I13.190 - Arabidopsis thaliana
gi|4539350|emb|CAB37498.1| putative pectinesterase
[Arabidopsis thaliana] gi|7270826|emb|CAB80507.1|
putative pectinesterase [Arabidopsis thaliana]
Length = 548
Score = 199 bits (505), Expect = 4e-50
Identities = 89/117 (76%), Positives = 102/117 (87%)
Frame = -3
Query: 664 FQNHESIVQSYHIDGYSFWVVGMDGGEWTPASRNEYNLIDAVSRSTTQVYPKSWTAIYMA 485
FQN E IVQSYH+DGYSFWVVG D G W+ ASR EYNL DA+SRSTTQVYP+SWTA+Y+A
Sbjct: 432 FQNREKIVQSYHLDGYSFWVVGTDRGTWSKASRREYNLRDAISRSTTQVYPESWTAVYVA 491
Query: 484 LDNVGMWNIRSGFWARQYLGQQFYLRVYSPVGSIRDEYPIPKNALLCGKAAGRATRP 314
LDNVGMWN+RS +WARQYLGQQFYLRVYSP S+RDEY +PKNALLCG+A+ + T P
Sbjct: 492 LDNVGMWNLRSEYWARQYLGQQFYLRVYSPTHSLRDEYLLPKNALLCGRASNKHTTP 548
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 577,512,753
Number of Sequences: 1393205
Number of extensions: 12651579
Number of successful extensions: 28040
Number of sequences better than 10.0: 152
Number of HSP's better than 10.0 without gapping: 27339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27980
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
