Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004422A_C01 KMC004422A_c01
(489 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177872.2| nucellin-like protein; protein id: At1g77480.1,... 71 6e-12
dbj|BAC43357.1| putative nucellin [Arabidopsis thaliana] 64 1e-09
ref|NP_567922.1| nucellin -like protein; protein id: At4g33490.1... 64 1e-09
pir||T06000 aspartic proteinase homolog F17M5.250 - Arabidopsis ... 64 1e-09
pir||B96804 nucellin-like protein, 27671-25467 [imported] - Arab... 63 2e-09
>ref|NP_177872.2| nucellin-like protein; protein id: At1g77480.1, supported by cDNA:
gi_17065171 [Arabidopsis thaliana]
gi|17065172|gb|AAL32740.1| nucellin-like protein
[Arabidopsis thaliana] gi|24899795|gb|AAN65112.1|
nucellin-like protein [Arabidopsis thaliana]
Length = 466
Score = 71.2 bits (173), Expect = 6e-12
Identities = 33/51 (64%), Positives = 39/51 (75%)
Frame = -1
Query: 489 EVGLGDLNIIGDISLQDKMVIYDNEKQLIGWVSSNCDTLPSVDRDFEGRFS 337
E+GL NIIGDIS Q MVIYDNEKQ IGW+SS+CD LP+V+ D+ G S
Sbjct: 384 EIGLEGYNIIGDISFQGIMVIYDNEKQRIGWISSDCDKLPNVNHDYGGDLS 434
>dbj|BAC43357.1| putative nucellin [Arabidopsis thaliana]
Length = 413
Score = 63.5 bits (153), Expect = 1e-09
Identities = 27/42 (64%), Positives = 36/42 (85%)
Frame = -1
Query: 489 EVGLGDLNIIGDISLQDKMVIYDNEKQLIGWVSSNCDTLPSV 364
E+GL +LN+IGDIS+QD+M+IYDNEKQ IGW+ +CD L S+
Sbjct: 364 EIGLQNLNLIGDISMQDQMIIYDNEKQSIGWMPVDCDELASL 405
>ref|NP_567922.1| nucellin -like protein; protein id: At4g33490.1, supported by cDNA:
24738. [Arabidopsis thaliana] gi|21592493|gb|AAM64443.1|
nucellin-like protein [Arabidopsis thaliana]
Length = 425
Score = 63.5 bits (153), Expect = 1e-09
Identities = 27/42 (64%), Positives = 36/42 (85%)
Frame = -1
Query: 489 EVGLGDLNIIGDISLQDKMVIYDNEKQLIGWVSSNCDTLPSV 364
E+GL +LN+IGDIS+QD+M+IYDNEKQ IGW+ +CD L S+
Sbjct: 376 EIGLQNLNLIGDISMQDQMIIYDNEKQSIGWMPVDCDELASL 417
>pir||T06000 aspartic proteinase homolog F17M5.250 - Arabidopsis thaliana
gi|4490316|emb|CAB38807.1| nucellin-like protein
[Arabidopsis thaliana] gi|7270297|emb|CAB80066.1|
nucellin-like protein [Arabidopsis thaliana]
Length = 420
Score = 63.5 bits (153), Expect = 1e-09
Identities = 27/42 (64%), Positives = 36/42 (85%)
Frame = -1
Query: 489 EVGLGDLNIIGDISLQDKMVIYDNEKQLIGWVSSNCDTLPSV 364
E+GL +LN+IGDIS+QD+M+IYDNEKQ IGW+ +CD L S+
Sbjct: 371 EIGLQNLNLIGDISMQDQMIIYDNEKQSIGWMPVDCDELASL 412
>pir||B96804 nucellin-like protein, 27671-25467 [imported] - Arabidopsis
thaliana gi|12323376|gb|AAG51657.1|AC010704_1
nucellin-like protein; 27671-25467 [Arabidopsis
thaliana]
Length = 427
Score = 63.2 bits (152), Expect = 2e-09
Identities = 29/40 (72%), Positives = 32/40 (79%)
Frame = -1
Query: 489 EVGLGDLNIIGDISLQDKMVIYDNEKQLIGWVSSNCDTLP 370
E+GL NIIGDIS Q MVIYDNEKQ IGW+SS+CD LP
Sbjct: 379 EIGLEGYNIIGDISFQGIMVIYDNEKQRIGWISSDCDKLP 418
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 391,858,150
Number of Sequences: 1393205
Number of extensions: 7502246
Number of successful extensions: 18604
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 18172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18599
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
