Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004421A_C01 KMC004421A_c01
(399 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567506.1| similar to chloroplast nucleoid DNA-binding pro... 67 4e-11
pir||F71432 hypothetical protein - Arabidopsis thaliana gi|22450... 50 5e-06
dbj|BAB84414.1| P0690B02.2 [Oryza sativa (japonica cultivar-group)] 44 4e-04
gb|AAM66061.1| chloroplast nucleoid DNA binding protein, putativ... 42 0.002
ref|NP_171637.1| chloroplast nucleoid DNA binding protein, putat... 42 0.002
>ref|NP_567506.1| similar to chloroplast nucleoid DNA-binding protein-like; protein
id: At4g16563.1, supported by cDNA: gi_15809799,
supported by cDNA: gi_18377814 [Arabidopsis thaliana]
gi|15809800|gb|AAL06828.1| AT4g16560/dl4305c
[Arabidopsis thaliana] gi|18377815|gb|AAL67094.1|
AT4g16560/dl4305c [Arabidopsis thaliana]
Length = 499
Score = 67.4 bits (163), Expect = 4e-11
Identities = 31/36 (86%), Positives = 33/36 (91%)
Frame = -3
Query: 394 ATLGNYQQQGFEVVYDLEEQRVGFAKRQCASLWDSL 287
A LGNYQQQGFEVVYDL +RVGFAKR+CASLWDSL
Sbjct: 463 AILGNYQQQGFEVVYDLLNRRVGFAKRKCASLWDSL 498
>pir||F71432 hypothetical protein - Arabidopsis thaliana
gi|2245012|emb|CAB10432.1| hypothetical protein
[Arabidopsis thaliana] gi|7268406|emb|CAB78698.1|
hypothetical protein [Arabidopsis thaliana]
Length = 1046
Score = 50.4 bits (119), Expect = 5e-06
Identities = 24/35 (68%), Positives = 27/35 (76%)
Frame = -3
Query: 394 ATLGNYQQQGFEVVYDLEEQRVGFAKRQCASLWDS 290
A LGNYQQQGFEVVYDL +RVGFAKR ++ S
Sbjct: 478 AILGNYQQQGFEVVYDLLNRRVGFAKRNLLAIQSS 512
>dbj|BAB84414.1| P0690B02.2 [Oryza sativa (japonica cultivar-group)]
Length = 446
Score = 44.3 bits (103), Expect = 4e-04
Identities = 17/31 (54%), Positives = 25/31 (79%)
Frame = -3
Query: 394 ATLGNYQQQGFEVVYDLEEQRVGFAKRQCAS 302
+ +GN QQQGF VV+D+E++R+GFA + C S
Sbjct: 416 SVIGNVQQQGFRVVFDVEKERIGFAPKGCTS 446
>gb|AAM66061.1| chloroplast nucleoid DNA binding protein, putative [Arabidopsis
thaliana]
Length = 485
Score = 42.0 bits (97), Expect = 0.002
Identities = 19/28 (67%), Positives = 20/28 (70%)
Frame = -3
Query: 388 LGNYQQQGFEVVYDLEEQRVGFAKRQCA 305
+GN QQQGF VVYDL RVGFA CA
Sbjct: 458 IGNIQQQGFRVVYDLASSRVGFAPGGCA 485
>ref|NP_171637.1| chloroplast nucleoid DNA binding protein, putative; protein id:
At1g01300.1, supported by cDNA: 7567. [Arabidopsis
thaliana] gi|25518405|pir||C86143 hypothetical protein
F6F3.10 - Arabidopsis thaliana
gi|9665144|gb|AAF97328.1|AC023628_9 Unknown protein
[Arabidopsis thaliana] gi|22135930|gb|AAM91547.1|
chloroplast nucleoid DNA binding protein, putative
[Arabidopsis thaliana]
Length = 485
Score = 42.0 bits (97), Expect = 0.002
Identities = 19/28 (67%), Positives = 20/28 (70%)
Frame = -3
Query: 388 LGNYQQQGFEVVYDLEEQRVGFAKRQCA 305
+GN QQQGF VVYDL RVGFA CA
Sbjct: 458 IGNIQQQGFRVVYDLASSRVGFAPGGCA 485
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,125,005
Number of Sequences: 1393205
Number of extensions: 7656125
Number of successful extensions: 18165
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 17656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18157
length of database: 448,689,247
effective HSP length: 108
effective length of database: 298,223,107
effective search space used: 7157354568
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
