Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004420A_C01 KMC004420A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK58515.1|AF249675_1 beta-1,3-glucanase-like protein [Olea e... 40 0.020
gb|AAM64809.1| unknown [Arabidopsis thaliana] 34 0.84
ref|NP_196417.1| glycosyl hydrolase family 17; protein id: At5g0... 34 0.84
gb|AAM47584.1| putative expressed protein [Sorghum bicolor] 34 1.1
gb|AAH08056.1|AAH08056 pleckstrin 2 (mouse) homolog [Homo sapiens] 33 1.4
>gb|AAK58515.1|AF249675_1 beta-1,3-glucanase-like protein [Olea europaea]
Length = 460
Score = 39.7 bits (91), Expect = 0.020
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -1
Query: 507 NPFSCDFSQTATLSTYNPSYNNCVYAGGA 421
N ++CDFSQTATL+ NPSY C + G+
Sbjct: 431 NSWNCDFSQTATLTNTNPSYGACNFPSGS 459
>gb|AAM64809.1| unknown [Arabidopsis thaliana]
Length = 194
Score = 34.3 bits (77), Expect = 0.84
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1
Query: 498 SCDFSQTATLSTYNPSYNNCVYAGGAA*PKKQESRYVWP 382
SC+F+ TATL+T +PSY C + A+ S V P
Sbjct: 83 SCNFTGTATLTTTDPSYTGCAFPSSASGSSGSGSTTVTP 121
>ref|NP_196417.1| glycosyl hydrolase family 17; protein id: At5g08000.1, supported by
cDNA: 33347. [Arabidopsis thaliana]
gi|11357398|pir||T45625 hypothetical protein F13G24.200
- Arabidopsis thaliana gi|6562314|emb|CAB62612.1|
putative protein [Arabidopsis thaliana]
gi|26452180|dbj|BAC43178.1| GPI-anchored protein
[Arabidopsis thaliana] gi|28372924|gb|AAO39944.1|
At5g08000 [Arabidopsis thaliana]
Length = 194
Score = 34.3 bits (77), Expect = 0.84
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1
Query: 498 SCDFSQTATLSTYNPSYNNCVYAGGAA*PKKQESRYVWP 382
SC+F+ TATL+T +PSY C + A+ S V P
Sbjct: 83 SCNFTGTATLTTTDPSYTGCAFPSSASGSSGSGSTTVTP 121
>gb|AAM47584.1| putative expressed protein [Sorghum bicolor]
Length = 157
Score = 33.9 bits (76), Expect = 1.1
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1
Query: 507 NPFSCDFSQTATLSTYNPSYNNCVY 433
NP +C FS TATLS +PS N C Y
Sbjct: 84 NPQACVFSGTATLSNNDPSGNGCTY 108
>gb|AAH08056.1|AAH08056 pleckstrin 2 (mouse) homolog [Homo sapiens]
Length = 354
Score = 33.5 bits (75), Expect = 1.4
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +2
Query: 95 GETLRKKNFLLNQYNIVYTWTLRFQIMTQHTYIYY 199
G+ + K+ FL+ + +IV+ W R+ I+ Q+T +YY
Sbjct: 3 GDGVLKEGFLVKRGHIVHNWKARWFILRQNTLVYY 37
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,231,686
Number of Sequences: 1393205
Number of extensions: 7864573
Number of successful extensions: 17080
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 16550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17077
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
