Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004419A_C01 KMC004419A_c01
(634 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02101.1| gb|AAF04893.1~gene_id:MXC7.13~similar to unknown... 111 9e-24
ref|NP_188950.1| unknown protein; protein id: At3g23090.1 [Arabi... 111 9e-24
gb|AAO37544.1| unknown protein [Oryza sativa (japonica cultivar-... 99 4e-20
ref|NP_565829.1| expressed protein; protein id: At2g35880.1, sup... 91 1e-17
pir||B84774 hypothetical protein At2g35880 [imported] - Arabidop... 91 1e-17
>dbj|BAB02101.1| gb|AAF04893.1~gene_id:MXC7.13~similar to unknown protein
[Arabidopsis thaliana]
Length = 374
Score = 111 bits (277), Expect = 9e-24
Identities = 59/103 (57%), Positives = 71/103 (68%)
Frame = -1
Query: 634 EKNQNETRTKEEMEEAIKQLRKSLTFKASPMPTFYHEGPPPKVELKKPPPTRAKSPKLGR 455
EK Q+E R KE E A++QLRKSL FKA+PMP FYHEGPPPKVELKKP PTRAKSPKLGR
Sbjct: 258 EKTQSEARNKEATEAALRQLRKSLRFKANPMPKFYHEGPPPKVELKKPLPTRAKSPKLGR 317
Query: 454 RKSNNGAIKLGEGDKEKKAVAQQKHHTLKTNDYGRSDVNDESS 326
R EG++ K A ++H T KT + D +DE++
Sbjct: 318 RNPK-------EGNRAKG--ASRRHETRKTLVISKEDHDDETT 351
>ref|NP_188950.1| unknown protein; protein id: At3g23090.1 [Arabidopsis thaliana]
gi|27765054|gb|AAO23648.1| At3g23090 [Arabidopsis
thaliana]
Length = 338
Score = 111 bits (277), Expect = 9e-24
Identities = 59/103 (57%), Positives = 71/103 (68%)
Frame = -1
Query: 634 EKNQNETRTKEEMEEAIKQLRKSLTFKASPMPTFYHEGPPPKVELKKPPPTRAKSPKLGR 455
EK Q+E R KE E A++QLRKSL FKA+PMP FYHEGPPPKVELKKP PTRAKSPKLGR
Sbjct: 222 EKTQSEARNKEATEAALRQLRKSLRFKANPMPKFYHEGPPPKVELKKPLPTRAKSPKLGR 281
Query: 454 RKSNNGAIKLGEGDKEKKAVAQQKHHTLKTNDYGRSDVNDESS 326
R EG++ K A ++H T KT + D +DE++
Sbjct: 282 RNPK-------EGNRAKG--ASRRHETRKTLVISKEDHDDETT 315
>gb|AAO37544.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 359
Score = 99.4 bits (246), Expect = 4e-20
Identities = 49/88 (55%), Positives = 59/88 (66%)
Frame = -1
Query: 634 EKNQNETRTKEEMEEAIKQLRKSLTFKASPMPTFYHEGPPPKVELKKPPPTRAKSPKLGR 455
EKN+ E R KEE E A+KQLRKSL +A PMP+FY EGPPPK ELKK PPTRAKSPK R
Sbjct: 244 EKNEAEARKKEEQETALKQLRKSLVIRAKPMPSFYQEGPPPKAELKKVPPTRAKSPKFTR 303
Query: 454 RKSNNGAIKLGEGDKEKKAVAQQKHHTL 371
R+S + A E A ++ H++
Sbjct: 304 RRSCSDAPPTPEAANTTAASSRSHRHSI 331
>ref|NP_565829.1| expressed protein; protein id: At2g35880.1, supported by cDNA:
gi_16209719 [Arabidopsis thaliana]
gi|16209720|gb|AAL14415.1| At2g35880/F11F19.21
[Arabidopsis thaliana] gi|20197995|gb|AAD21469.2|
expressed protein [Arabidopsis thaliana]
gi|22655282|gb|AAM98231.1| unknown protein [Arabidopsis
thaliana]
Length = 432
Score = 90.9 bits (224), Expect = 1e-17
Identities = 46/67 (68%), Positives = 53/67 (78%)
Frame = -1
Query: 634 EKNQNETRTKEEMEEAIKQLRKSLTFKASPMPTFYHEGPPPKVELKKPPPTRAKSPKLGR 455
EK + ++KE EE IK+LRKSLTFKA PMP+FY E PPPKVELKK P TR KSPKLGR
Sbjct: 274 EKTNLQAKSKESQEEEIKRLRKSLTFKAGPMPSFYKE-PPPKVELKKIPTTRPKSPKLGR 332
Query: 454 RKSNNGA 434
RKS++ A
Sbjct: 333 RKSSSDA 339
>pir||B84774 hypothetical protein At2g35880 [imported] - Arabidopsis thaliana
Length = 439
Score = 90.9 bits (224), Expect = 1e-17
Identities = 46/67 (68%), Positives = 53/67 (78%)
Frame = -1
Query: 634 EKNQNETRTKEEMEEAIKQLRKSLTFKASPMPTFYHEGPPPKVELKKPPPTRAKSPKLGR 455
EK + ++KE EE IK+LRKSLTFKA PMP+FY E PPPKVELKK P TR KSPKLGR
Sbjct: 281 EKTNLQAKSKESQEEEIKRLRKSLTFKAGPMPSFYKE-PPPKVELKKIPTTRPKSPKLGR 339
Query: 454 RKSNNGA 434
RKS++ A
Sbjct: 340 RKSSSDA 346
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,634,727
Number of Sequences: 1393205
Number of extensions: 11721952
Number of successful extensions: 45673
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 36925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43638
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
