Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004418A_C01 KMC004418A_c01
(388 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_705573.1| hypothetical protein [Plasmodium falciparum 3D7... 30 5.7
ref|XP_234933.1| similar to Zinc finger protein 208 [Rattus norv... 30 9.6
ref|XP_229165.1| similar to hypothetical protein [Plasmodium fal... 30 9.6
>ref|NP_705573.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615818|emb|CAD52810.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 521
Score = 30.4 bits (67), Expect = 5.7
Identities = 16/43 (37%), Positives = 28/43 (64%), Gaps = 1/43 (2%)
Frame = +3
Query: 123 HSQKHSVDESSTL-SAEASENIFPIKHNQMHKQ*INVESIDPK 248
HS++ S D+++ + + + EN+ IK N +KQ INV +I+ K
Sbjct: 437 HSKESSKDKTTCIINTTSKENVSDIKQNITNKQIINVNNINSK 479
>ref|XP_234933.1| similar to Zinc finger protein 208 [Rattus norvegicus]
Length = 1188
Score = 29.6 bits (65), Expect = 9.6
Identities = 22/62 (35%), Positives = 27/62 (43%)
Frame = +2
Query: 116 CNSLSKTFSR*IIYIVSRSLRKHFSNQTQPNA*TVNQCRKHRP*ALTRDSVSSPHFSQVS 295
CN SK F+ RSLRKH N T+ +QC K P S SS + +
Sbjct: 646 CNQCSKAFAN------FRSLRKHEQNHTREKPYECSQCSKAFP------SRSSLQIHERT 693
Query: 296 HT 301
HT
Sbjct: 694 HT 695
>ref|XP_229165.1| similar to hypothetical protein [Plasmodium falciparum 3D7] [Rattus
norvegicus]
Length = 1051
Score = 29.6 bits (65), Expect = 9.6
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Frame = +1
Query: 136 IQ*MNHLHCQPKPQKTFFQSNTTKCINSKSMSKASTLSI--------N*RFSE*PSL*PS 291
IQ +H PK + + ++ K ++S+ + + S+ N E PSL +
Sbjct: 841 IQDFQKIHVFPKSKSSRKSKSSRKSMSSQKSTSSQNPSLPENPKLPGNQSLPENPSLPEN 900
Query: 292 VSYIAAISIPTHLCFPVSVVLPFILLASSSS 384
S A+ +P C P S LP L +SS
Sbjct: 901 PSLPASPGLPASACLPTSPHLPASLCLPTSS 931
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 290,911,019
Number of Sequences: 1393205
Number of extensions: 5020333
Number of successful extensions: 9022
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9018
length of database: 448,689,247
effective HSP length: 104
effective length of database: 303,795,927
effective search space used: 7291102248
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
