Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004417A_C01 KMC004417A_c01
(638 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM91526.1| unknown protein [Arabidopsis thaliana] 137 1e-31
ref|NP_179517.1| unknown protein; protein id: At2g19270.1 [Arabi... 137 1e-31
ref|NP_291051.1| papillary renal cell carcinoma (translocation-a... 44 0.001
sp|Q92733|PRCC_HUMAN Proline-rich protein PRCC (Papillary renal ... 44 0.001
ref|NP_005964.2| papillary renal cell carcinoma (translocation-a... 44 0.001
>gb|AAM91526.1| unknown protein [Arabidopsis thaliana]
Length = 236
Score = 137 bits (345), Expect = 1e-31
Identities = 67/95 (70%), Positives = 81/95 (84%), Gaps = 1/95 (1%)
Frame = -3
Query: 627 KRRRNEIPTEVIEVKQDELMKNRPREDQAKITGIAFGPSYMPV-SSAKGKPTKLHKRKHQ 451
+R RN++P E++EVKQDELMKNRPR DQ K TGIAFGP+Y PV SS+KGK +KLHKRKHQ
Sbjct: 143 RRGRNQMP-EIVEVKQDELMKNRPRVDQVKSTGIAFGPAYQPVTSSSKGKVSKLHKRKHQ 201
Query: 450 IGSLYFDMKQNEMKLAERRAKGMLTKAETQAKYGW 346
I +L+ DMK E +L ERR++G+LTKAETQAKYGW
Sbjct: 202 ITALFMDMKHKESELTERRSRGLLTKAETQAKYGW 236
>ref|NP_179517.1| unknown protein; protein id: At2g19270.1 [Arabidopsis thaliana]
gi|7486251|pir||T01275 hypothetical protein At2g19270
[imported] - Arabidopsis thaliana
gi|3135257|gb|AAC16457.1| unknown protein [Arabidopsis
thaliana]
Length = 359
Score = 137 bits (345), Expect = 1e-31
Identities = 67/95 (70%), Positives = 81/95 (84%), Gaps = 1/95 (1%)
Frame = -3
Query: 627 KRRRNEIPTEVIEVKQDELMKNRPREDQAKITGIAFGPSYMPV-SSAKGKPTKLHKRKHQ 451
+R RN++P E++EVKQDELMKNRPR DQ K TGIAFGP+Y PV SS+KGK +KLHKRKHQ
Sbjct: 266 RRGRNQMP-EIVEVKQDELMKNRPRVDQVKSTGIAFGPAYQPVTSSSKGKVSKLHKRKHQ 324
Query: 450 IGSLYFDMKQNEMKLAERRAKGMLTKAETQAKYGW 346
I +L+ DMK E +L ERR++G+LTKAETQAKYGW
Sbjct: 325 ITALFMDMKHKESELTERRSRGLLTKAETQAKYGW 359
>ref|NP_291051.1| papillary renal cell carcinoma (translocation-associated) [Mus
musculus] gi|11527239|gb|AAG36941.1|AF273750_1 papillary
renal cell carcinoma-associated protein [Mus musculus]
gi|26347207|dbj|BAC37252.1| unnamed protein product [Mus
musculus]
Length = 491
Score = 44.3 bits (103), Expect = 0.001
Identities = 29/95 (30%), Positives = 47/95 (48%), Gaps = 1/95 (1%)
Frame = -3
Query: 627 KRRRNEIPTEVIEVKQDELMKNRPREDQAKITGIAFGPSYMPVSSAKGK-PTKLHKRKHQ 451
KR R +E+K D+ + + +T S+ S KG+ PT +RKHQ
Sbjct: 400 KRNRGREEINFVEIKGDDQLSGAQQWMTKSLTEEKTMKSF---SKKKGEQPTGQQRRKHQ 456
Query: 450 IGSLYFDMKQNEMKLAERRAKGMLTKAETQAKYGW 346
I L K+ E++L ++ L++ +TQAKYG+
Sbjct: 457 ITYLIHQAKERELELKNTWSENKLSRRQTQAKYGF 491
>sp|Q92733|PRCC_HUMAN Proline-rich protein PRCC (Papillary renal cell carcinoma
translocation associated gene protein)
gi|1518265|emb|CAA65791.1| prcc [Homo sapiens]
gi|1869818|emb|CAA68060.1| TPRC [Homo sapiens]
gi|13436212|gb|AAH04913.1|AAH04913 papillary renal cell
carcinoma (translocation-associated) [Homo sapiens]
Length = 491
Score = 44.3 bits (103), Expect = 0.001
Identities = 29/95 (30%), Positives = 47/95 (48%), Gaps = 1/95 (1%)
Frame = -3
Query: 627 KRRRNEIPTEVIEVKQDELMKNRPREDQAKITGIAFGPSYMPVSSAKGK-PTKLHKRKHQ 451
KR R +E+K D+ + + +T S+ S KG+ PT +RKHQ
Sbjct: 400 KRNRGREEINFVEIKGDDQLSGAQQWMTKSLTEEKTMKSF---SKKKGEQPTGQQRRKHQ 456
Query: 450 IGSLYFDMKQNEMKLAERRAKGMLTKAETQAKYGW 346
I L K+ E++L ++ L++ +TQAKYG+
Sbjct: 457 ITYLIHQAKERELELKNTWSENKLSRRQTQAKYGF 491
>ref|NP_005964.2| papillary renal cell carcinoma (translocation-associated) [Homo
sapiens] gi|14714625|gb|AAH10450.1|AAH10450 papillary
renal cell carcinoma (translocation-associated) [Homo
sapiens]
Length = 491
Score = 44.3 bits (103), Expect = 0.001
Identities = 29/95 (30%), Positives = 47/95 (48%), Gaps = 1/95 (1%)
Frame = -3
Query: 627 KRRRNEIPTEVIEVKQDELMKNRPREDQAKITGIAFGPSYMPVSSAKGK-PTKLHKRKHQ 451
KR R +E+K D+ + + +T S+ S KG+ PT +RKHQ
Sbjct: 400 KRNRGREEINFVEIKGDDQLSGAQQWMTKSLTEEKTMKSF---SKKKGEQPTGQQRRKHQ 456
Query: 450 IGSLYFDMKQNEMKLAERRAKGMLTKAETQAKYGW 346
I L K+ E++L ++ L++ +TQAKYG+
Sbjct: 457 ITYLIHQAKERELELKNTWSENKLSRRQTQAKYGF 491
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,208,300
Number of Sequences: 1393205
Number of extensions: 10056247
Number of successful extensions: 24097
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 23475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24082
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
