Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004416A_C01 KMC004416A_c01
(418 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564539.1| expressed protein; protein id: At1g49050.1, sup... 52 1e-06
pir||B96804 nucellin-like protein, 27671-25467 [imported] - Arab... 43 8e-04
ref|NP_177872.2| nucellin-like protein; protein id: At1g77480.1,... 41 0.004
ref|NP_175079.1| nucellin, putative; protein id: At1g44130.1 [Ar... 39 0.020
ref|NP_563808.1| expressed protein; protein id: At1g08210.1, sup... 38 0.026
>ref|NP_564539.1| expressed protein; protein id: At1g49050.1, supported by cDNA:
gi_13430539 [Arabidopsis thaliana]
gi|7770346|gb|AAF69716.1|AC016041_21 F27J15.15
[Arabidopsis thaliana]
gi|13430540|gb|AAK25892.1|AF360182_1 unknown protein
[Arabidopsis thaliana] gi|14532748|gb|AAK64075.1|
unknown protein [Arabidopsis thaliana]
Length = 583
Score = 52.4 bits (124), Expect = 1e-06
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = -3
Query: 416 LGDVSLRGHLVVYDNVNQRIGWERADCGMP 327
LGD+S+RGHL+VYDNV +RIGW ++DC P
Sbjct: 542 LGDISMRGHLIVYDNVKRRIGWMKSDCVRP 571
>pir||B96804 nucellin-like protein, 27671-25467 [imported] - Arabidopsis
thaliana gi|12323376|gb|AAG51657.1|AC010704_1
nucellin-like protein; 27671-25467 [Arabidopsis
thaliana]
Length = 427
Score = 43.1 bits (100), Expect = 8e-04
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = -3
Query: 416 LGDVSLRGHLVVYDNVNQRIGWERADCGMPSRRLRKSRDLF 294
+GD+S +G +V+YDN QRIGW +DC +L KS LF
Sbjct: 388 IGDISFQGIMVIYDNEKQRIGWISSDCD----KLPKSEPLF 424
>ref|NP_177872.2| nucellin-like protein; protein id: At1g77480.1, supported by cDNA:
gi_17065171 [Arabidopsis thaliana]
gi|17065172|gb|AAL32740.1| nucellin-like protein
[Arabidopsis thaliana] gi|24899795|gb|AAN65112.1|
nucellin-like protein [Arabidopsis thaliana]
Length = 466
Score = 40.8 bits (94), Expect = 0.004
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = -3
Query: 416 LGDVSLRGHLVVYDNVNQRIGWERADC 336
+GD+S +G +V+YDN QRIGW +DC
Sbjct: 393 IGDISFQGIMVIYDNEKQRIGWISSDC 419
>ref|NP_175079.1| nucellin, putative; protein id: At1g44130.1 [Arabidopsis thaliana]
gi|25350205|pir||F96505 probable nucellin [imported] -
Arabidopsis thaliana
gi|12320825|gb|AAG50556.1|AC074228_11 nucellin, putative
[Arabidopsis thaliana]
Length = 405
Score = 38.5 bits (88), Expect = 0.020
Identities = 12/27 (44%), Positives = 22/27 (81%)
Frame = -3
Query: 416 LGDVSLRGHLVVYDNVNQRIGWERADC 336
+GD+S++G +++YDN Q++GW +DC
Sbjct: 373 IGDISMQGLMMIYDNEKQQLGWVSSDC 399
>ref|NP_563808.1| expressed protein; protein id: At1g08210.1, supported by cDNA:
gi_11993876, supported by cDNA: gi_20260141 [Arabidopsis
thaliana] gi|11993877|gb|AAG42922.1|AF329505_1 unknown
protein [Arabidopsis thaliana]
gi|20260142|gb|AAM12969.1| unknown protein [Arabidopsis
thaliana] gi|22136092|gb|AAM91124.1| unknown protein
[Arabidopsis thaliana]
Length = 492
Score = 38.1 bits (87), Expect = 0.026
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = -3
Query: 416 LGDVSLRGHLVVYDNVNQRIGWERADCGM 330
LGD+ L+ +VVYD V QRIGW DC +
Sbjct: 414 LGDLVLKDKVVVYDLVRQRIGWAEYDCSL 442
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 340,195,117
Number of Sequences: 1393205
Number of extensions: 6854997
Number of successful extensions: 15534
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 14962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15477
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
