Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004415A_C01 KMC004415A_c01
(382 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_473253.2| hypothetical protein [Plasmodium falciparum 3D7... 33 1.1
ref|NP_702134.1| hypothetical protein [Plasmodium falciparum 3D7... 32 2.6
gb|AAC64645.1| unknown [Fischerella sp. UTEX 1931] 31 4.4
ref|NP_356575.1| AGR_L_1574p [Agrobacterium tumefaciens] gi|1793... 30 9.7
>ref|NP_473253.2| hypothetical protein [Plasmodium falciparum 3D7]
gi|23477015|emb|CAB38986.3| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1816
Score = 32.7 bits (73), Expect = 1.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 243 FYFYFNFFLKIDVKLFASCNNN*HLYYMADYLFVF 139
+Y+YF+ F I K N N HLY D +F++
Sbjct: 658 YYYYFHSFFNIITKFINIINKNLHLYNSTDLMFLY 692
>ref|NP_702134.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497313|gb|AAN36858.1|AE014820_8 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1431
Score = 31.6 bits (70), Expect = 2.6
Identities = 24/82 (29%), Positives = 37/82 (44%), Gaps = 3/82 (3%)
Frame = -2
Query: 240 YFYFNFFLKIDVKLFASCNNN*HLYYMADYLFVF*L---LYVTQEIMIGW*LVSKAKGTS 70
Y Y + LKI+ +F + NN +Y+ Y F+ YV I+ K K +
Sbjct: 463 YIYHSDILKIEKNIFVTFNNMNQCFYIFIYPFIIYFNKYKYVLSNIIPNLKEKKKKKKNN 522
Query: 69 *NSFSCLLILLIKFYIQCLVLF 4
N F LIL KF ++ ++F
Sbjct: 523 NNDFDFDLIL--KFVVELFIIF 542
>gb|AAC64645.1| unknown [Fischerella sp. UTEX 1931]
Length = 108
Score = 30.8 bits (68), Expect = 4.4
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Frame = +3
Query: 111 LFPVLRTITKIQINNLPYNIS------VSCCCNWQTTLHLFSR 221
L P+ R + IQI N Y ++ + CCC +Q +HLF R
Sbjct: 27 LRPLRRLVDSIQIKN--YRLAHLICQIIPCCCPFQRDIHLFGR 67
>ref|NP_356575.1| AGR_L_1574p [Agrobacterium tumefaciens] gi|17937765|ref|NP_534554.1|
sarcosine oxidase alpha subunit [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gi|25520814|pir||F98229 sarcosine oxidase alpha chain
PA5418 [imported] - Agrobacterium tumefaciens (strain
C58, Cereon) gi|25524748|pir||AH3056 sarcosine oxidase
alpha subunit [imported] - Agrobacterium tumefaciens
(strain C58, Dupont) gi|15159208|gb|AAK89360.1|
AGR_L_1574p [Agrobacterium tumefaciens str. C58 (Cereon)]
gi|17742518|gb|AAL44870.1| sarcosine oxidase alpha
subunit [Agrobacterium tumefaciens str. C58 (U.
Washington)]
Length = 986
Score = 29.6 bits (65), Expect = 9.7
Identities = 15/63 (23%), Positives = 33/63 (51%), Gaps = 2/63 (3%)
Frame = +1
Query: 190 TGKQLYIYFQEKIKIKVKNDSDPFLSDPTDLQPVVLLSMGPEAEWTEE--SSLSFLLLPK 363
TG++ + + K ++ V ++ ++DP +P+ +L A W+E S++F L+
Sbjct: 890 TGRKQLVGLKTKDRLTVPDEGGQIVTDPNQPKPMTMLGHVTSAYWSENLGHSIAFALVAD 949
Query: 364 RRS 372
R+
Sbjct: 950 GRA 952
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 327,618,983
Number of Sequences: 1393205
Number of extensions: 6568964
Number of successful extensions: 14607
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14602
length of database: 448,689,247
effective HSP length: 102
effective length of database: 306,582,337
effective search space used: 7357976088
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
