Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004414A_C01 KMC004414A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564218.1| expressed protein; protein id: At1g24440.1, sup... 203 1e-51
ref|NP_563922.1| Expressed protein; protein id: At1g13195.1, sup... 186 1e-46
gb|AAM93676.1| unknown protein [Oryza sativa (japonica cultivar-... 135 4e-31
gb|AAF86688.1| MTD2 [Medicago truncatula] 132 3e-30
ref|NP_195772.1| putative protein; protein id: At5g01520.1, supp... 129 2e-29
>ref|NP_564218.1| expressed protein; protein id: At1g24440.1, supported by cDNA:
156298. [Arabidopsis thaliana] gi|25352233|pir||E86378
protein F21J9.10 [imported] - Arabidopsis thaliana
gi|9743332|gb|AAF97956.1|AC000103_6 F21J9.10
[Arabidopsis thaliana] gi|21553664|gb|AAM62757.1|
unknown [Arabidopsis thaliana]
gi|24030317|gb|AAN41327.1| unknown protein [Arabidopsis
thaliana]
Length = 251
Score = 203 bits (517), Expect = 1e-51
Identities = 98/153 (64%), Positives = 119/153 (77%), Gaps = 5/153 (3%)
Frame = -3
Query: 586 ILPSLQRLLGSFDKSELSDQG-----PSSIEGSRYGKKVIEGDEKLTNVDLQREDECGIC 422
ILPSL+RL +F ++L D+ P +I +Y IEG + ++DL+REDECGIC
Sbjct: 104 ILPSLERLHINF--ADLPDESLWYPNPKAITKKQYD---IEGSRYMNSIDLEREDECGIC 158
Query: 421 LEPCTKIVLPYCCHAMCIKCYCKWNRKSESCPFCRSSLRRVKSEDLWVLTCNEDVVDAET 242
LEPCTK+VLP CCHAMCIKCY WN KSESCPFCR S++RV SEDLWVLTC+EDVVD ET
Sbjct: 159 LEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSIKRVNSEDLWVLTCDEDVVDPET 218
Query: 241 VSREDLLHFYLYINKLPKDHPDALFLMYYEYLI 143
V++EDLL FYL+IN LPKD+P+A FL+Y EYLI
Sbjct: 219 VTKEDLLRFYLHINSLPKDYPEAAFLVYNEYLI 251
>ref|NP_563922.1| Expressed protein; protein id: At1g13195.1, supported by cDNA:
36399. [Arabidopsis thaliana] gi|25352235|pir||D86266
hypothetical protein F3F19.22 - Arabidopsis thaliana
gi|4850408|gb|AAD31078.1|AC007357_27 Contains PF|00097
Zinc finger (C3HC4) ring finger motif. [Arabidopsis
thaliana] gi|21593124|gb|AAM65073.1| unknown
[Arabidopsis thaliana]
Length = 260
Score = 186 bits (473), Expect = 1e-46
Identities = 88/148 (59%), Positives = 108/148 (72%), Gaps = 2/148 (1%)
Frame = -3
Query: 586 ILPSLQRLLGSFDKSELSDQGPSSIEGSRYGKKVIEG--DEKLTNVDLQREDECGICLEP 413
ILPSLQ L + D+ E +D G + R KK+ + + +N L+RE+ECGICLE
Sbjct: 112 ILPSLQLLHSNLDELETTDIG---FDLKRLSKKITKEARSSRFSNAGLEREEECGICLET 168
Query: 412 CTKIVLPYCCHAMCIKCYCKWNRKSESCPFCRSSLRRVKSEDLWVLTCNEDVVDAETVSR 233
CTK+VLP CCH+MCIKCY WN KS+SCPFCR S++RV SEDLWVL + DVVD T SR
Sbjct: 169 CTKMVLPNCCHSMCIKCYRNWNLKSQSCPFCRGSMKRVNSEDLWVLAGDNDVVDTRTASR 228
Query: 232 EDLLHFYLYINKLPKDHPDALFLMYYEY 149
EDL FYLYIN LPKD+P+ALF++YYEY
Sbjct: 229 EDLFRFYLYINSLPKDYPEALFVVYYEY 256
>gb|AAM93676.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 242
Score = 135 bits (340), Expect = 4e-31
Identities = 63/147 (42%), Positives = 95/147 (63%)
Frame = -3
Query: 586 ILPSLQRLLGSFDKSELSDQGPSSIEGSRYGKKVIEGDEKLTNVDLQREDECGICLEPCT 407
I PSL +L +E D+ ++ RY ++ + L+ +D +RE+ECGIC+E +
Sbjct: 97 IFPSLLQLQRGITDTE--DKKQKAVCMERYRRRDEDERNILSEIDAEREEECGICMEMNS 154
Query: 406 KIVLPYCCHAMCIKCYCKWNRKSESCPFCRSSLRRVKSEDLWVLTCNEDVVDAETVSRED 227
K+VLP C H MC++CY WN +S+SCPFCR +L++ DLW+ ++DVVD ETVSRE+
Sbjct: 155 KVVLPNCTHNMCLRCYQDWNSRSQSCPFCRDNLKKTDPGDLWIYVEDQDVVDLETVSREN 214
Query: 226 LLHFYLYINKLPKDHPDALFLMYYEYL 146
L ++YINKLP PD +F +Y ++
Sbjct: 215 LRRLFMYINKLPLIVPDVIFSIYDSHI 241
>gb|AAF86688.1| MTD2 [Medicago truncatula]
Length = 243
Score = 132 bits (332), Expect = 3e-30
Identities = 62/143 (43%), Positives = 88/143 (61%)
Frame = -3
Query: 586 ILPSLQRLLGSFDKSELSDQGPSSIEGSRYGKKVIEGDEKLTNVDLQREDECGICLEPCT 407
I P+L +L ++L ++ + +RY KK D + + +D++RE ECG+CLE
Sbjct: 98 IFPALLQLQKGV--TDLEERKQKEVYANRYQKKTDFKDRRESKIDIEREKECGVCLEVKA 155
Query: 406 KIVLPYCCHAMCIKCYCKWNRKSESCPFCRSSLRRVKSEDLWVLTCNEDVVDAETVSRED 227
K+VLP CCH MC KCY +W +S+SCPFCR SL+RV S DLW+ T D+VD T+ +E+
Sbjct: 156 KVVLPNCCHQMCFKCYREWCLRSQSCPFCRDSLKRVNSGDLWIYTDTSDIVDVGTIFKEN 215
Query: 226 LLHFYLYINKLPKDHPDALFLMY 158
+LYI KLP PD + Y
Sbjct: 216 CKILFLYIEKLPLIIPDPRHVSY 238
>ref|NP_195772.1| putative protein; protein id: At5g01520.1, supported by cDNA:
gi_15292802, supported by cDNA: gi_20258864 [Arabidopsis
thaliana] gi|11282331|pir||T48173 hypothetical protein
F7A7.40 - Arabidopsis thaliana
gi|7327811|emb|CAB82268.1| putative protein [Arabidopsis
thaliana] gi|15292803|gb|AAK92770.1| unknown protein
[Arabidopsis thaliana] gi|20258865|gb|AAM14104.1|
unknown protein [Arabidopsis thaliana]
Length = 242
Score = 129 bits (325), Expect = 2e-29
Identities = 59/132 (44%), Positives = 85/132 (63%)
Frame = -3
Query: 586 ILPSLQRLLGSFDKSELSDQGPSSIEGSRYGKKVIEGDEKLTNVDLQREDECGICLEPCT 407
+ PSL +L G +++ ++ I RY KK K++ +DL+RE+ECGICLE
Sbjct: 97 LFPSLLQLHGGI--TDVEERKQKEICDKRYRKKDRTDKGKMSEIDLEREEECGICLEIRN 154
Query: 406 KIVLPYCCHAMCIKCYCKWNRKSESCPFCRSSLRRVKSEDLWVLTCNEDVVDAETVSRED 227
K+VLP C H+MCI CY W +S+SCPFCR SL+RV S DLW+ TC+ ++ D + +E+
Sbjct: 155 KVVLPTCNHSMCINCYRNWRARSQSCPFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKEN 214
Query: 226 LLHFYLYINKLP 191
L +YI+KLP
Sbjct: 215 LKRLLIYIDKLP 226
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,441,926
Number of Sequences: 1393205
Number of extensions: 10349914
Number of successful extensions: 31751
Number of sequences better than 10.0: 939
Number of HSP's better than 10.0 without gapping: 30380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31569
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
