Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004413A_C01 KMC004413A_c01
(684 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK30204.1|AF349963_1 endoxyloglucan transferase [Daucus carota] 122 5e-27
dbj|BAA88668.1| ETAG-A3 [Lycopersicon esculentum] 116 3e-25
ref|NP_172925.1| xyloglucan endotransglycosylase (XTR2); protein... 97 2e-19
gb|AAD45125.1|AF163821_1 endoxyloglucan transferase [Arabidopsis... 93 3e-18
gb|AAM63050.1| putative xyloglucan-specific glucanase [Arabidops... 93 3e-18
>gb|AAK30204.1|AF349963_1 endoxyloglucan transferase [Daucus carota]
Length = 330
Score = 122 bits (306), Expect = 5e-27
Identities = 55/90 (61%), Positives = 65/90 (72%)
Frame = -2
Query: 683 VDPIEHAAKCDKSQSSGAVPSGVTTSQRIKMENFRKKHMTYSYCYDKTRYKAPPSECVIN 504
VDPIE + CD + S +VP+G T R KM+N RKK+M YSYCYD TRY+ PPSECVI+
Sbjct: 232 VDPIEMSTSCDTAPKSQSVPTGTTKESRTKMQNLRKKYMQYSYCYDTTRYQVPPSECVID 291
Query: 503 PKEAERLRRFDPVTFGSGRHHRGKRHHPSR 414
P E+ERLR FDPVTFG+ GKRHH R
Sbjct: 292 PLESERLRGFDPVTFGTSHRGHGKRHHNRR 321
>dbj|BAA88668.1| ETAG-A3 [Lycopersicon esculentum]
Length = 314
Score = 116 bits (291), Expect = 3e-25
Identities = 52/98 (53%), Positives = 68/98 (69%)
Frame = -2
Query: 683 VDPIEHAAKCDKSQSSGAVPSGVTTSQRIKMENFRKKHMTYSYCYDKTRYKAPPSECVIN 504
VDPIE + KCD S ++P+ ++ QR KME FR K++ YSYCYD+TRY P SECVI+
Sbjct: 216 VDPIELSPKCDIVLDSASIPTRISPDQRRKMERFRNKYLQYSYCYDRTRYNVPQSECVID 275
Query: 503 PKEAERLRRFDPVTFGSGRHHRGKRHHPSRGNQGEAAA 390
PKEA RLR FDP+TFG H+ KRHH + + + +A
Sbjct: 276 PKEANRLRGFDPMTFGGVPRHQNKRHHQRQSRREDTSA 313
>ref|NP_172925.1| xyloglucan endotransglycosylase (XTR2); protein id: At1g14720.1,
supported by cDNA: 19079., supported by cDNA:
gi_1244755, supported by cDNA: gi_14326520, supported by
cDNA: gi_2154610 [Arabidopsis thaliana]
gi|2129770|pir||S71224 xyloglucan
endo-1,4-beta-D-glucanase (EC 3.2.1.-) XTR-2 -
Arabidopsis thaliana gi|1244756|gb|AAB18366.1|
xyloglucan endotransglycosylase-related protein
gi|2154611|dbj|BAA20290.1| endoxyloglucan transferase
related protein [Arabidopsis thaliana]
gi|5533311|gb|AAD45124.1|AF163820_1 endoxyloglucan
transferase [Arabidopsis thaliana]
gi|8778237|gb|AAF79246.1|AC006917_31 F10B6.12
[Arabidopsis thaliana]
gi|14326521|gb|AAK60305.1|AF385714_1 At1g14720/F10B6_29
[Arabidopsis thaliana] gi|21553987|gb|AAM63068.1|
xyloglucan endo-transglycosylase, putative [Arabidopsis
thaliana]
Length = 332
Score = 97.4 bits (241), Expect = 2e-19
Identities = 52/93 (55%), Positives = 61/93 (64%), Gaps = 3/93 (3%)
Frame = -2
Query: 683 VDPIEHAAKC-DKSQSSGAVPSGVTTSQRIKMENFRKKHMTYSYCYDKTRYKAPPSECVI 507
VDP E C D++ + + S +T SQR KME FR+KHMTYSYCYD RYK SECV+
Sbjct: 233 VDPTEKFPSCKDEAVQNLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSECVV 292
Query: 506 NPKEAERLRRFDPVTFGS--GRHHRGKRHHPSR 414
NP EA+RLR +DPVTFG H RGK SR
Sbjct: 293 NPAEAKRLRVYDPVTFGGIPHGHRRGKHRSRSR 325
>gb|AAD45125.1|AF163821_1 endoxyloglucan transferase [Arabidopsis thaliana]
Length = 333
Score = 93.2 bits (230), Expect = 3e-18
Identities = 46/92 (50%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 683 VDPIEHAAKCDKSQSSGA-VPSGVTTSQRIKMENFRKKHMTYSYCYDKTRYKAPPSECVI 507
VDPIE +CD+ + +T SQR KM+ FR++ MTYSYCYD+ RY SECV+
Sbjct: 233 VDPIEQFPRCDEGAAEDMRAAQEITPSQRSKMDVFRRRLMTYSYCYDRARYNVALSECVV 292
Query: 506 NPKEAERLRRFDPVTFGS-GRHHRGKRHHPSR 414
NP EA+RLR +DPV FG R HR +H R
Sbjct: 293 NPAEAQRLRVYDPVRFGGIPRRHRNGKHRSKR 324
>gb|AAM63050.1| putative xyloglucan-specific glucanase [Arabidopsis thaliana]
Length = 333
Score = 93.2 bits (230), Expect = 3e-18
Identities = 46/92 (50%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 683 VDPIEHAAKCDKSQSSGA-VPSGVTTSQRIKMENFRKKHMTYSYCYDKTRYKAPPSECVI 507
VDPIE +CD+ + +T SQR KM+ FR++ MTYSYCYD+ RY SECV+
Sbjct: 233 VDPIEQFPRCDEGAAEDIRAAQEITPSQRSKMDVFRRRLMTYSYCYDRARYNVALSECVV 292
Query: 506 NPKEAERLRRFDPVTFGS-GRHHRGKRHHPSR 414
NP EA+RLR +DPV FG R HR +H R
Sbjct: 293 NPAEAQRLRVYDPVRFGGIPRRHRNGKHRSKR 324
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 584,527,411
Number of Sequences: 1393205
Number of extensions: 13056798
Number of successful extensions: 31411
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 30270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31380
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
