Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004412A_C01 KMC004412A_c01
(613 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD29679.1|AF133209_1 CLC-Nt2 protein [Nicotiana tabacum] 209 2e-53
gb|AAB17007.1| voltage-gated chloride channel [Arabidopsis thali... 204 6e-52
emb|CAA96057.1| CLC-a chloride channel protein [Arabidopsis thal... 204 6e-52
ref|NP_198905.1| CLC-a chloride channel protein; protein id: At5... 204 6e-52
gb|AAL24139.1| putative anion channel protein [Arabidopsis thali... 204 6e-52
>gb|AAD29679.1|AF133209_1 CLC-Nt2 protein [Nicotiana tabacum]
Length = 786
Score = 209 bits (533), Expect = 2e-53
Identities = 100/136 (73%), Positives = 122/136 (89%), Gaps = 1/136 (0%)
Frame = -1
Query: 613 ILRAHLIQALKKKWFLKERRRTEEWEVREKFTSVELAERGN-MEEVAITREEMEMFVDLH 437
+LR HL+ LKKKWFL ERRRTEEWEVREKFT ++LAERG +E+V +T++EMEM+VDLH
Sbjct: 651 VLRTHLLLVLKKKWFLHERRRTEEWEVREKFTWIDLAERGGKIEDVLVTKDEMEMYVDLH 710
Query: 436 PLTNTTPFTVLESVSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLPYNIL 257
PLTNTTP+TV+ES+SVAKAM+LFRQVGLRH+L+VPKYQA+GVSPV+GILTRQDL +NIL
Sbjct: 711 PLTNTTPYTVVESLSVAKAMVLFRQVGLRHMLIVPKYQAAGVSPVVGILTRQDLRAHNIL 770
Query: 256 TVFPHLAKHKNREKRN 209
+VFPHL K K+ +K N
Sbjct: 771 SVFPHLEKSKSGKKGN 786
>gb|AAB17007.1| voltage-gated chloride channel [Arabidopsis thaliana]
Length = 773
Score = 204 bits (520), Expect = 6e-52
Identities = 100/135 (74%), Positives = 118/135 (87%), Gaps = 1/135 (0%)
Frame = -1
Query: 613 ILRAHLIQALKKKWFLKERRRTEEWEVREKFTSVELAER-GNMEEVAITREEMEMFVDLH 437
ILRAHL++ LKK+WFL E+RRTEEWEVREKFT VELAER N ++VAIT EM+++VDLH
Sbjct: 639 ILRAHLVKVLKKRWFLNEKRRTEEWEVREKFTPVELAEREDNFDDVAITSSEMQLYVDLH 698
Query: 436 PLTNTTPFTVLESVSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLPYNIL 257
PLTNTTP+TV++S+SVAKA++LFR VGLRHLLVVPK QASG+SPVIGILTRQDL YNIL
Sbjct: 699 PLTNTTPYTVVQSMSVAKALVLFRSVGLRHLLVVPKIQASGMSPVIGILTRQDLRAYNIL 758
Query: 256 TVFPHLAKHKNREKR 212
FPHL KHK+ + R
Sbjct: 759 QAFPHLDKHKSGKAR 773
>emb|CAA96057.1| CLC-a chloride channel protein [Arabidopsis thaliana]
Length = 775
Score = 204 bits (520), Expect = 6e-52
Identities = 100/135 (74%), Positives = 118/135 (87%), Gaps = 1/135 (0%)
Frame = -1
Query: 613 ILRAHLIQALKKKWFLKERRRTEEWEVREKFTSVELAER-GNMEEVAITREEMEMFVDLH 437
ILRAHL++ LKK+WFL E+RRTEEWEVREKFT VELAER N ++VAIT EM+++VDLH
Sbjct: 641 ILRAHLVKVLKKRWFLNEKRRTEEWEVREKFTPVELAEREDNFDDVAITSSEMQLYVDLH 700
Query: 436 PLTNTTPFTVLESVSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLPYNIL 257
PLTNTTP+TV++S+SVAKA++LFR VGLRHLLVVPK QASG+SPVIGILTRQDL YNIL
Sbjct: 701 PLTNTTPYTVVQSMSVAKALVLFRSVGLRHLLVVPKIQASGMSPVIGILTRQDLRAYNIL 760
Query: 256 TVFPHLAKHKNREKR 212
FPHL KHK+ + R
Sbjct: 761 QAFPHLDKHKSGKAR 775
>ref|NP_198905.1| CLC-a chloride channel protein; protein id: At5g40890.1, supported by
cDNA: gi_1619955, supported by cDNA: gi_16604692,
supported by cDNA: gi_2935343 [Arabidopsis thaliana]
gi|25348213|pir||T52107 anion channel protein CLC-a
[validated] - Arabidopsis thaliana
gi|2935344|gb|AAC05742.1| anion channel protein
[Arabidopsis thaliana] gi|10177968|dbj|BAB11351.1| anion
channel protein [Arabidopsis thaliana]
gi|23297775|gb|AAN13022.1| anion channel protein
[Arabidopsis thaliana]
Length = 775
Score = 204 bits (520), Expect = 6e-52
Identities = 100/135 (74%), Positives = 118/135 (87%), Gaps = 1/135 (0%)
Frame = -1
Query: 613 ILRAHLIQALKKKWFLKERRRTEEWEVREKFTSVELAER-GNMEEVAITREEMEMFVDLH 437
ILRAHL++ LKK+WFL E+RRTEEWEVREKFT VELAER N ++VAIT EM+++VDLH
Sbjct: 641 ILRAHLVKVLKKRWFLNEKRRTEEWEVREKFTPVELAEREDNFDDVAITSSEMQLYVDLH 700
Query: 436 PLTNTTPFTVLESVSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLPYNIL 257
PLTNTTP+TV++S+SVAKA++LFR VGLRHLLVVPK QASG+SPVIGILTRQDL YNIL
Sbjct: 701 PLTNTTPYTVVQSMSVAKALVLFRSVGLRHLLVVPKIQASGMSPVIGILTRQDLRAYNIL 760
Query: 256 TVFPHLAKHKNREKR 212
FPHL KHK+ + R
Sbjct: 761 QAFPHLDKHKSGKAR 775
>gb|AAL24139.1| putative anion channel protein [Arabidopsis thaliana]
Length = 775
Score = 204 bits (520), Expect = 6e-52
Identities = 100/135 (74%), Positives = 118/135 (87%), Gaps = 1/135 (0%)
Frame = -1
Query: 613 ILRAHLIQALKKKWFLKERRRTEEWEVREKFTSVELAER-GNMEEVAITREEMEMFVDLH 437
ILRAHL++ LKK+WFL E+RRTEEWEVREKFT VELAER N ++VAIT EM+++VDLH
Sbjct: 641 ILRAHLVKVLKKRWFLNEKRRTEEWEVREKFTPVELAEREDNFDDVAITSSEMQLYVDLH 700
Query: 436 PLTNTTPFTVLESVSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLPYNIL 257
PLTNTTP+TV++S+SVAKA++LFR VGLRHLLVVPK QASG+SPVIGILTRQDL YNIL
Sbjct: 701 PLTNTTPYTVVQSMSVAKALVLFRSVGLRHLLVVPKIQASGMSPVIGILTRQDLRAYNIL 760
Query: 256 TVFPHLAKHKNREKR 212
FPHL KHK+ + R
Sbjct: 761 QAFPHLDKHKSGKAR 775
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,116,741
Number of Sequences: 1393205
Number of extensions: 11056937
Number of successful extensions: 29524
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 27890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29432
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
