Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004411A_C01 KMC004411A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197735.1| putative protein; protein id: At5g23440.1 [Arab... 108 1e-26
ref|NP_568195.1| Expressed protein; protein id: At5g08410.1, sup... 107 6e-23
emb|CAC08341.1| lipoic acid synthase-like protein [Arabidopsis t... 107 6e-23
emb|CAC39619.1| subunit A of ferredoxin-thioredoxin-reductase [S... 96 1e-22
sp|P80680|FTRV_MAIZE FERREDOXIN-THIOREDOXIN REDUCTASE, VARIABLE ... 89 2e-17
>ref|NP_197735.1| putative protein; protein id: At5g23440.1 [Arabidopsis thaliana]
gi|9759082|dbj|BAB09560.1| contains similarity to
ferredoxin-thioredoxin reductase variable
chain~gene_id:K19M13.7 [Arabidopsis thaliana]
Length = 182
Score = 108 bits (270), Expect(2) = 1e-26
Identities = 52/78 (66%), Positives = 64/78 (81%), Gaps = 1/78 (1%)
Frame = -2
Query: 494 PSSTSSSSESEEAES-SKVGARVRVKVPLKVYHVPKVPEFDLEGAEGEIKQYVALWKGKK 318
PSS+ SS E EAE+ +K+G+RVRV PLKVYHV +VPE DLEG EG++K YVA+WKGK+
Sbjct: 86 PSSSPSSEEEIEAEAKAKIGSRVRVTAPLKVYHVNRVPEVDLEGMEGKLKDYVAVWKGKR 145
Query: 317 ISANFPYKVQFVTEIEGR 264
ISAN PYK++F EIEGR
Sbjct: 146 ISANLPYKIEFFKEIEGR 163
Score = 32.3 bits (72), Expect(2) = 1e-26
Identities = 13/17 (76%), Positives = 15/17 (87%)
Frame = -3
Query: 262 GAVKFFAHLKEDEFEFL 212
G VKF +HLKEDEFEF+
Sbjct: 164 GLVKFVSHLKEDEFEFI 180
>ref|NP_568195.1| Expressed protein; protein id: At5g08410.1, supported by cDNA:
31366. [Arabidopsis thaliana] gi|21592688|gb|AAM64637.1|
unknown [Arabidopsis thaliana]
gi|26449733|dbj|BAC41990.1| putative lipoic acid
synthase [Arabidopsis thaliana]
gi|28372908|gb|AAO39936.1| At5g08410 [Arabidopsis
thaliana]
Length = 184
Score = 107 bits (268), Expect = 6e-23
Identities = 53/76 (69%), Positives = 59/76 (76%)
Frame = -2
Query: 491 SSTSSSSESEEAESSKVGARVRVKVPLKVYHVPKVPEFDLEGAEGEIKQYVALWKGKKIS 312
SSTS +E +E K+GARVRV VPLKVYHV +VPE +L G EG IK YV LWKGKKIS
Sbjct: 90 SSTSLETEEDEKAKEKIGARVRVTVPLKVYHVVRVPEVELMGMEGFIKDYVVLWKGKKIS 149
Query: 311 ANFPYKVQFVTEIEGR 264
AN P+KVQFV EIEGR
Sbjct: 150 ANLPFKVQFVKEIEGR 165
Score = 33.1 bits (74), Expect = 1.7
Identities = 17/40 (42%), Positives = 26/40 (64%)
Frame = -3
Query: 331 GRVRKSLLIFLIRFSLLLKLKVAGAVKFFAHLKEDEFEFL 212
G+ + L F ++F + +++ G VKFF HLKEDEFE +
Sbjct: 145 GKKISANLPFKVQF--VKEIEGRGPVKFFTHLKEDEFELI 182
>emb|CAC08341.1| lipoic acid synthase-like protein [Arabidopsis thaliana]
Length = 477
Score = 107 bits (268), Expect = 6e-23
Identities = 53/76 (69%), Positives = 59/76 (76%)
Frame = -2
Query: 491 SSTSSSSESEEAESSKVGARVRVKVPLKVYHVPKVPEFDLEGAEGEIKQYVALWKGKKIS 312
SSTS +E +E K+GARVRV VPLKVYHV +VPE +L G EG IK YV LWKGKKIS
Sbjct: 383 SSTSLETEEDEKAKEKIGARVRVTVPLKVYHVVRVPEVELMGMEGFIKDYVVLWKGKKIS 442
Query: 311 ANFPYKVQFVTEIEGR 264
AN P+KVQFV EIEGR
Sbjct: 443 ANLPFKVQFVKEIEGR 458
Score = 33.1 bits (74), Expect = 1.7
Identities = 17/40 (42%), Positives = 26/40 (64%)
Frame = -3
Query: 331 GRVRKSLLIFLIRFSLLLKLKVAGAVKFFAHLKEDEFEFL 212
G+ + L F ++F + +++ G VKFF HLKEDEFE +
Sbjct: 438 GKKISANLPFKVQF--VKEIEGRGPVKFFTHLKEDEFELI 475
>emb|CAC39619.1| subunit A of ferredoxin-thioredoxin-reductase [Solanum tuberosum]
Length = 171
Score = 95.5 bits (236), Expect(2) = 1e-22
Identities = 52/83 (62%), Positives = 61/83 (72%), Gaps = 7/83 (8%)
Frame = -2
Query: 491 SSTSSSS------ESEEAESSKVGARVRVKVPLKVYHVPKVPEFDLEGAEGEIKQYVALW 330
SSTSS S E + A KVG++VRV VPLKVYH PKVPE DL+G G +KQYVA+
Sbjct: 70 SSTSSLSVDEGVDEKDAAAMGKVGSKVRVTVPLKVYHEPKVPELDLDGRIGTVKQYVAVH 129
Query: 329 KGKKISANFPYKVQFVT-EIEGR 264
KGK+ISAN PYKVQFV ++EGR
Sbjct: 130 KGKQISANLPYKVQFVVDDLEGR 152
Score = 32.0 bits (71), Expect(2) = 1e-22
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3
Query: 256 VKFFAHLKEDEFEFL 212
VKF AHLKEDEFEFL
Sbjct: 156 VKFSAHLKEDEFEFL 170
>sp|P80680|FTRV_MAIZE FERREDOXIN-THIOREDOXIN REDUCTASE, VARIABLE CHAIN (FTR-V)
(FERREDOXIN-THIOREDOXIN REDUCTASE SUBUNIT A) (FTR-A)
Length = 97
Score = 89.4 bits (220), Expect = 2e-17
Identities = 37/67 (55%), Positives = 52/67 (77%)
Frame = -2
Query: 464 EEAESSKVGARVRVKVPLKVYHVPKVPEFDLEGAEGEIKQYVALWKGKKISANFPYKVQF 285
E A + K+G RVRV PL+VYHV K P+ D++G EG +KQYV +WKGK+++ANFP+KV+F
Sbjct: 11 EAAAAPKIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRVTANFPFKVEF 70
Query: 284 VTEIEGR 264
+EG+
Sbjct: 71 ELAVEGQ 77
Score = 32.3 bits (72), Expect = 3.0
Identities = 16/30 (53%), Positives = 21/30 (69%), Gaps = 3/30 (10%)
Frame = -3
Query: 292 FSLLLKLKVAGA---VKFFAHLKEDEFEFL 212
F + +L V G V+FFAHL+EDEFEF+
Sbjct: 66 FKVEFELAVEGQPKPVRFFAHLREDEFEFV 95
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,225,853
Number of Sequences: 1393205
Number of extensions: 7656512
Number of successful extensions: 26654
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 23638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26447
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
