>KMC004410A_C01 KMC004410A_c01
agagaacaaaaagatttgatTGATAAACAAAAGATGAGTACAGACCCCTCAGGGAGGAAA
AGAGATAAAAAACTCCAAGAACACAACATAAAACAAAAAAAAAACAACCCTCCAACAGAA
AACAAGCAAAAAGAAAAAAAGCCAAAATGAACTTTGAAAGACACCCTAACAACAAAAGAA
ATCCCGAAAGTAGGGTCTTGTAAGCTTAGCAGCAGTAGATGGATATTCCTTAGACCTTAA
GTGTCTCAGTAATACATAGCCTATAATGGTCTTTAAAATTCCAATCATTATAAATTAAGT
TGCAATCCAACCATCAAGGAGTGCCTCACCAAAAGCCATGGAAGCAGCTGCTGCTCCCTC
CTCGGTCCACTGGCTTCGTCAGGGCCGCA

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC004410A_C01 KMC004410A_c01
         (389 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_063966.2| NADH dehydrogenase subunit 2 [Paragonimus weste...    37  0.060
gb|AAN15175.1| NADH dehydrogenase subunit 2 [Paragonimus westerm...    37  0.060
gb|AAA62274.1| ORF1                                                    37  0.079
ref|NP_705357.1| DNA topoisomerase III, putative [Plasmodium fal...    36  0.13
ref|NP_700720.1| hypothetical protein [Plasmodium falciparum 3D7...    35  0.17

>ref|NP_063966.2| NADH dehydrogenase subunit 2 [Paragonimus westermani]
           gi|22532994|gb|AAM98248.1| NADH dehydrogenase subunit 2
           [Paragonimus westermani]
          Length = 288

 Score = 37.0 bits (84), Expect = 0.060
 Identities = 30/84 (35%), Positives = 40/84 (46%), Gaps = 3/84 (3%)
 Frame = -2

Query: 304 CNLIYNDWNFKDHYRLCITETLKV*GISIYCC*AYKTLL-SGFLLLLGCLSKFILAFFLF 128
           C L Y+   F     LC    L   G+  +    YK LL SG++++ G  S F+   FLF
Sbjct: 73  CGLFYDSLLF-----LCFLGLLMKFGVFPFHGWIYKVLLGSGWVVVWG-FSVFLKIPFLF 126

Query: 127 ACFLLE--GCFFFVLCCVLGVFYL 62
            CF L   G FF  + CVL   +L
Sbjct: 127 ICFFLSSGGAFFLNVVCVLSFLFL 150

>gb|AAN15175.1| NADH dehydrogenase subunit 2 [Paragonimus westermani]
          Length = 288

 Score = 37.0 bits (84), Expect = 0.060
 Identities = 30/84 (35%), Positives = 40/84 (46%), Gaps = 3/84 (3%)
 Frame = -2

Query: 304 CNLIYNDWNFKDHYRLCITETLKV*GISIYCC*AYKTLL-SGFLLLLGCLSKFILAFFLF 128
           C L Y+   F     LC    L   G+  +    YK LL SG++++ G  S F+   FLF
Sbjct: 73  CGLFYDSLLF-----LCFLGLLMKFGVFPFHGWIYKVLLGSGWVVVWG-FSVFLKIPFLF 126

Query: 127 ACFLLE--GCFFFVLCCVLGVFYL 62
            CF L   G FF  + CVL   +L
Sbjct: 127 ICFFLSSGGAFFLNVVCVLSFLFL 150

>gb|AAA62274.1| ORF1
          Length = 146

 Score = 36.6 bits (83), Expect = 0.079
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = -2

Query: 181 FLLLLGCLSKFILAFFLFACFLL---EGCFFFVLCCVLGVFYLFSSLRGLYSSFVYQSNL 11
           F ++LGC   F+L F+L++ F L      +FF L C   VF++   L GL+  F+Y    
Sbjct: 34  FFVVLGC--DFLLVFWLYSLFFLWRYNFVYFFFLFCF--VFFVLLFLFGLFGFFLYFLLC 89

Query: 10  FVL 2
           FVL
Sbjct: 90  FVL 92

>ref|NP_705357.1| DNA topoisomerase III, putative [Plasmodium falciparum 3D7]
           gi|23615602|emb|CAD52594.1| DNA topoisomerase III,
           putative [Plasmodium falciparum 3D7]
          Length = 710

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 19/49 (38%), Positives = 30/49 (60%)
 Frame = +3

Query: 54  EEKR*KTPRTQHKTKKKQPSNRKQAKRKKAKMNFERHPNNKRNPESRVL 200
           +EK+ K  +   K KKK+ S +K+ K+KK K+N     NNK+N  + V+
Sbjct: 296 DEKKKKKKKKTKKKKKKKNSTKKKKKKKKNKIN----NNNKKNKHNNVV 340

>ref|NP_700720.1| hypothetical protein [Plasmodium falciparum 3D7]
           gi|23495113|gb|AAN35444.1|AE014833_15 hypothetical
           protein [Plasmodium falciparum 3D7]
          Length = 713

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 27/97 (27%), Positives = 45/97 (45%), Gaps = 1/97 (1%)
 Frame = -2

Query: 295 IYNDWNFKDHYRLCITETLKV*GISIYCC*AYKTLLSGFLLLLGCLSKFILAFFLFACFL 116
           I+N+ N +D++R  + + LK+     Y       L S  ++L   L+ F L F     FL
Sbjct: 24  IFNNMNKQDNFRSLLFDLLKIKWYKFYA-----NLFSYIIILTSLLNFFFLFFINHISFL 78

Query: 115 LEGCFFFVLCCV-LGVFYLFSSLRGLYSSFVYQSNLF 8
           ++    F+L  + + +   F SL G Y     Q N+F
Sbjct: 79  IKHKKKFLLVSIPIWISVFFMSLIGSYFPCNIQKNIF 115

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 341,697,494
Number of Sequences: 1393205
Number of extensions: 7152108
Number of successful extensions: 41225
Number of sequences better than 10.0: 273
Number of HSP's better than 10.0 without gapping: 31819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38519
length of database: 448,689,247
effective HSP length: 105
effective length of database: 302,402,722
effective search space used: 7257665328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MR036g12_f BP078816 1 389 2 MR073a04_f BP081581 21 374

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