Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004409A_C01 KMC004409A_c01
(710 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T02406 hypothetical protein At2g44510 [imported] - Arabidop... 140 2e-32
ref|NP_566018.1| Expressed protein; protein id: At2g44510.1, sup... 140 2e-32
gb|AAO66530.1| putative p21 C-terminal-binding protein [Oryza sa... 134 1e-30
ref|NP_196003.1| putative protein; protein id: At5g03830.1 [Arab... 74 2e-12
gb|AAM14019.1| unknown protein [Arabidopsis thaliana] 60 2e-08
>pir||T02406 hypothetical protein At2g44510 [imported] - Arabidopsis thaliana
Length = 312
Score = 140 bits (352), Expect = 2e-32
Identities = 68/113 (60%), Positives = 90/113 (79%), Gaps = 1/113 (0%)
Frame = -2
Query: 709 LFDEVSWATEDEPTEDLRNSFKFNHYLILSKIYKNKNIEKKRKLSNDSD-EPIIYVKPED 533
LFDEVSWA EDEPTE LR SF+F YL+++KIYK KN ++++ + D E +++KPED
Sbjct: 199 LFDEVSWAIEDEPTEKLRRSFRFKSYLLVTKIYKLKNPKQRKPRHGEEDIEDTVFLKPED 258
Query: 532 EIFHKLSSWSFCFPLQNQQVDSHELRNYRSMGLVMAVEADKIPTFRQELSSLI 374
E+F +LSSWSF FP+++Q V S E++NY+ MGLVMAVEA+KIP FRQ L+SLI
Sbjct: 259 ELFLELSSWSFTFPMRSQLVTSQEMKNYQLMGLVMAVEANKIPKFRQMLNSLI 311
>ref|NP_566018.1| Expressed protein; protein id: At2g44510.1, supported by cDNA:
gi_15010573 [Arabidopsis thaliana]
gi|15010574|gb|AAK73946.1| At2g44510/F4I1.32
[Arabidopsis thaliana] gi|20197194|gb|AAC16097.2|
Expressed protein [Arabidopsis thaliana]
gi|21360495|gb|AAM47363.1| At2g44510/F4I1.32
[Arabidopsis thaliana]
Length = 326
Score = 140 bits (352), Expect = 2e-32
Identities = 68/113 (60%), Positives = 90/113 (79%), Gaps = 1/113 (0%)
Frame = -2
Query: 709 LFDEVSWATEDEPTEDLRNSFKFNHYLILSKIYKNKNIEKKRKLSNDSD-EPIIYVKPED 533
LFDEVSWA EDEPTE LR SF+F YL+++KIYK KN ++++ + D E +++KPED
Sbjct: 213 LFDEVSWAIEDEPTEKLRRSFRFKSYLLVTKIYKLKNPKQRKPRHGEEDIEDTVFLKPED 272
Query: 532 EIFHKLSSWSFCFPLQNQQVDSHELRNYRSMGLVMAVEADKIPTFRQELSSLI 374
E+F +LSSWSF FP+++Q V S E++NY+ MGLVMAVEA+KIP FRQ L+SLI
Sbjct: 273 ELFLELSSWSFTFPMRSQLVTSQEMKNYQLMGLVMAVEANKIPKFRQMLNSLI 325
>gb|AAO66530.1| putative p21 C-terminal-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 358
Score = 134 bits (338), Expect = 1e-30
Identities = 64/113 (56%), Positives = 87/113 (76%), Gaps = 1/113 (0%)
Frame = -2
Query: 709 LFDEVSWATEDEPTEDLRNSFKFNHYLILSKIYKNKNIEK-KRKLSNDSDEPIIYVKPED 533
LFDEVSWATEDEPT++LR+SF+F YL++ ++ + K K K K S + DEPIIY K ED
Sbjct: 244 LFDEVSWATEDEPTQELRDSFRFKQYLMVVRVLERKTPAKQKAKNSTEEDEPIIYPKLED 303
Query: 532 EIFHKLSSWSFCFPLQNQQVDSHELRNYRSMGLVMAVEADKIPTFRQELSSLI 374
EIF +LSSWSF FP++++Q E++NY+ MGLVMAV+A+ IP FR++L L+
Sbjct: 304 EIFRELSSWSFTFPIRSEQSAQQEMKNYKEMGLVMAVKAEAIPKFRKKLEDLL 356
>ref|NP_196003.1| putative protein; protein id: At5g03830.1 [Arabidopsis thaliana]
gi|11357877|pir||T48410 hypothetical protein F8F6.40 -
Arabidopsis thaliana gi|7406393|emb|CAB85503.1| putative
protein [Arabidopsis thaliana]
gi|9758012|dbj|BAB08609.1|
emb|CAB85503.1~gene_id:MED24.13~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 265
Score = 73.9 bits (180), Expect = 2e-12
Identities = 45/112 (40%), Positives = 56/112 (49%)
Frame = -2
Query: 709 LFDEVSWATEDEPTEDLRNSFKFNHYLILSKIYKNKNIEKKRKLSNDSDEPIIYVKPEDE 530
LFDEVSWATEDEPTE+LR SF+F Y++++KIY
Sbjct: 195 LFDEVSWATEDEPTEELRGSFRFKSYILIAKIY--------------------------- 227
Query: 529 IFHKLSSWSFCFPLQNQQVDSHELRNYRSMGLVMAVEADKIPTFRQELSSLI 374
KLSSWSF P+ +Q LV + E KIP FR++L SLI
Sbjct: 228 ---KLSSWSFILPMYSQ--------------LVTSQETQKIPEFRKKLKSLI 262
>gb|AAM14019.1| unknown protein [Arabidopsis thaliana]
Length = 246
Score = 60.5 bits (145), Expect = 2e-08
Identities = 25/34 (73%), Positives = 31/34 (90%)
Frame = -2
Query: 709 LFDEVSWATEDEPTEDLRNSFKFNHYLILSKIYK 608
LFDEVSWATEDEPTE+LR SF+F Y++++KIYK
Sbjct: 152 LFDEVSWATEDEPTEELRGSFRFKSYILIAKIYK 185
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 570,865,794
Number of Sequences: 1393205
Number of extensions: 11917078
Number of successful extensions: 27087
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 26091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27073
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
