Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004406A_C01 KMC004406A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05034 hypothetical protein F13C5.140 - Arabidopsis thalian... 66 3e-10
ref|NP_567570.1| Expressed protein; protein id: At4g18970.1, sup... 66 3e-10
gb|AAM63021.1| GDSL-motif lipase/hydrolase-like protein [Arabido... 65 5e-10
ref|NP_199379.1| GDSL-motif lipase/hydrolase-like protein; prote... 65 5e-10
gb|AAM67249.1| GDSL-motif lipase/hydrolase-like protein [Arabido... 63 3e-09
>pir||T05034 hypothetical protein F13C5.140 - Arabidopsis thaliana
gi|2832625|emb|CAA16754.1| putative protein [Arabidopsis
thaliana] gi|7268691|emb|CAB78899.1| putative protein
[Arabidopsis thaliana]
Length = 626
Score = 66.2 bits (160), Expect = 3e-10
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Frame = -3
Query: 585 GFKFTNAPCC---TTNERGKCILNGTPCQNRTEYVFWDGIHTSEAANIVTATISYSTSDS 415
GF+ TNA CC N + C+ PC NR EYVFWD H EAAN+V + S+ +
Sbjct: 553 GFRVTNAGCCGVGRNNGQITCLPGQAPCLNRDEYVFWDAFHPGEAANVVIGSRSFQRESA 612
Query: 414 AIAHPTNIKHL 382
+ AHP +I+ L
Sbjct: 613 SDAHPYDIQQL 623
>ref|NP_567570.1| Expressed protein; protein id: At4g18970.1, supported by cDNA:
42850., supported by cDNA: gi_16604576, supported by
cDNA: gi_21281049 [Arabidopsis thaliana]
gi|16604577|gb|AAL24090.1| unknown protein [Arabidopsis
thaliana] gi|21281050|gb|AAM44998.1| unknown protein
[Arabidopsis thaliana]
Length = 361
Score = 66.2 bits (160), Expect = 3e-10
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Frame = -3
Query: 585 GFKFTNAPCC---TTNERGKCILNGTPCQNRTEYVFWDGIHTSEAANIVTATISYSTSDS 415
GF+ TNA CC N + C+ PC NR EYVFWD H EAAN+V + S+ +
Sbjct: 288 GFRVTNAGCCGVGRNNGQITCLPGQAPCLNRDEYVFWDAFHPGEAANVVIGSRSFQRESA 347
Query: 414 AIAHPTNIKHL 382
+ AHP +I+ L
Sbjct: 348 SDAHPYDIQQL 358
>gb|AAM63021.1| GDSL-motif lipase/hydrolase-like protein [Arabidopsis thaliana]
Length = 362
Score = 65.5 bits (158), Expect = 5e-10
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = -3
Query: 585 GFKFTNAPCC---TTNERGKCILNGTPCQNRTEYVFWDGIHTSEAANIVTATISYSTSDS 415
GF+ TNA CC N + C+ PC NR EYVFWD H EAANIV S+ +
Sbjct: 289 GFRVTNAGCCGVGRNNGQITCLPGQAPCLNRNEYVFWDAFHPGEAANIVIGRRSFKREAA 348
Query: 414 AIAHPTNIKHL 382
+ AHP +I+ L
Sbjct: 349 SNAHPYDIQQL 359
>ref|NP_199379.1| GDSL-motif lipase/hydrolase-like protein; protein id: At5g45670.1,
supported by cDNA: 18389., supported by cDNA:
gi_17933311, supported by cDNA: gi_20453402 [Arabidopsis
thaliana] gi|9758670|dbj|BAB09209.1| GDSL-motif
lipase/hydrolase-like protein [Arabidopsis thaliana]
gi|17933312|gb|AAL48238.1|AF446366_1 AT5g45670/MRA19_6
[Arabidopsis thaliana] gi|20453403|gb|AAM19940.1|
AT5g45670/MRA19_6 [Arabidopsis thaliana]
Length = 362
Score = 65.5 bits (158), Expect = 5e-10
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = -3
Query: 585 GFKFTNAPCC---TTNERGKCILNGTPCQNRTEYVFWDGIHTSEAANIVTATISYSTSDS 415
GF+ TNA CC N + C+ PC NR EYVFWD H EAANIV S+ +
Sbjct: 289 GFRVTNAGCCGVGRNNGQITCLPGQAPCLNRNEYVFWDAFHPGEAANIVIGRRSFKREAA 348
Query: 414 AIAHPTNIKHL 382
+ AHP +I+ L
Sbjct: 349 SDAHPYDIQQL 359
>gb|AAM67249.1| GDSL-motif lipase/hydrolase-like protein [Arabidopsis thaliana]
Length = 361
Score = 62.8 bits (151), Expect = 3e-09
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = -3
Query: 585 GFKFTNAPCC---TTNERGKCILNGTPCQNRTEYVFWDGIHTSEAANIVTATISYSTSDS 415
GF+ TNA CC N + C+ PC NR EYVFWD EAAN+V + S+ +
Sbjct: 288 GFRVTNAGCCGVGRNNGQITCLPGQAPCLNRDEYVFWDAFXPGEAANVVIGSRSFQRESA 347
Query: 414 AIAHPTNIKHL 382
+ AHP +I+ L
Sbjct: 348 SDAHPYDIQQL 358
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,746,455
Number of Sequences: 1393205
Number of extensions: 10404051
Number of successful extensions: 26263
Number of sequences better than 10.0: 157
Number of HSP's better than 10.0 without gapping: 25114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26228
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
