Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004404A_C01 KMC004404A_c01
(637 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T03986 transformer-SR ribonucleoprotein - common tobacco (f... 135 3e-31
pir||JC7299 transformer-2-like protein - liverwort (Marchantia p... 110 1e-23
gb|AAF79558.1|AC022464_16 F22G5.31 [Arabidopsis thaliana] 89 5e-17
ref|NP_563787.1| transformer serine/arginine-rich ribonucleoprot... 89 5e-17
gb|AAO64199.1| putative transformer-SR ribonucleoprotein [Arabid... 89 5e-17
>pir||T03986 transformer-SR ribonucleoprotein - common tobacco (fragment)
gi|1781299|emb|CAA70700.1| transformer-SR
ribonucleoprotein [Nicotiana tabacum]
Length = 235
Score = 135 bits (341), Expect = 3e-31
Identities = 70/100 (70%), Positives = 78/100 (78%)
Frame = -1
Query: 637 DTVEDANRCVKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSTRDRDYGHRGGDRG 458
D++EDANRC+K+LNQSVLEGRYITVE+SRRKR RTPTPGHYLGLK+ R G GDRG
Sbjct: 115 DSLEDANRCIKHLNQSVLEGRYITVEKSRRKRARTPTPGHYLGLKNAR----GEGRGDRG 170
Query: 457 RYRGGGGGGSGRDDYQHRRSPRRSPYRGGRDYSPRRSSPY 338
RYR R+DY +RRSPR SPYR RDYSPRR SPY
Sbjct: 171 RYR-------DREDYGYRRSPRHSPYRSRRDYSPRR-SPY 202
>pir||JC7299 transformer-2-like protein - liverwort (Marchantia polymorpha)
Length = 244
Score = 110 bits (276), Expect = 1e-23
Identities = 60/115 (52%), Positives = 74/115 (64%)
Frame = -1
Query: 631 VEDANRCVKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSTRDRDYGHRGGDRGRY 452
+E A RC+KYLN+S LEGR ITVE+++RKR RTPTPG YLG+++ +
Sbjct: 141 LEGAERCIKYLNRSTLEGRMITVEKAKRKRARTPTPGEYLGVRAM-----------QSNR 189
Query: 451 RGGGGGGSGRDDYQHRRSPRRSPYRGGRDYSPRRSSPYAGRSRRERSRSLPYSPY 287
RGG GGG RD R SP +PY GGRD SP R SPY G +R+RS S Y+PY
Sbjct: 190 RGGRGGGFRRDARNSRHSPEYAPYSGGRDRSP-RYSPYRGH-QRDRSSSPQYAPY 242
>gb|AAF79558.1|AC022464_16 F22G5.31 [Arabidopsis thaliana]
Length = 415
Score = 89.0 bits (219), Expect = 5e-17
Identities = 64/142 (45%), Positives = 75/142 (52%), Gaps = 14/142 (9%)
Frame = -1
Query: 634 TVEDANRCVKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSTRDR----DYGHR-- 473
+V DANRC++ L+ SVL+GR ITVE++RR+R RTPTPG YLGL++ R R Y R
Sbjct: 160 SVGDANRCIRSLDHSVLQGRVITVEKARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRS 219
Query: 472 ---GGDRGRYRGGGGGGSGRDDYQHR-RSPRRSP-YRGGRDYSPRRSSPYAGRSRRERSR 308
R R G S Y R RS SP YR R YSP RS R R R R
Sbjct: 220 VSCSRSRSRSYSSDRGRSYSPSYGRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRDR 279
Query: 307 SLPYSPY---ASPDRRYARGSR 251
S YSPY R Y+R R
Sbjct: 280 S--YSPYYRRRDRSRSYSRNCR 299
>ref|NP_563787.1| transformer serine/arginine-rich ribonucleoprotein, putative;
protein id: At1g07350.1, supported by cDNA: gi_15292732
[Arabidopsis thaliana] gi|15292733|gb|AAK92735.1|
putative transformer-SR ribonucleoprotein [Arabidopsis
thaliana]
Length = 352
Score = 89.0 bits (219), Expect = 5e-17
Identities = 64/142 (45%), Positives = 75/142 (52%), Gaps = 14/142 (9%)
Frame = -1
Query: 634 TVEDANRCVKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSTRDR----DYGHR-- 473
+V DANRC++ L+ SVL+GR ITVE++RR+R RTPTPG YLGL++ R R Y R
Sbjct: 95 SVGDANRCIRSLDHSVLQGRVITVEKARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRS 154
Query: 472 ---GGDRGRYRGGGGGGSGRDDYQHR-RSPRRSP-YRGGRDYSPRRSSPYAGRSRRERSR 308
R R G S Y R RS SP YR R YSP RS R R R R
Sbjct: 155 VSCSRSRSRSYSSDRGRSYSPSYGRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRDR 214
Query: 307 SLPYSPY---ASPDRRYARGSR 251
S YSPY R Y+R R
Sbjct: 215 S--YSPYYRRRDRSRSYSRNCR 234
>gb|AAO64199.1| putative transformer-SR ribonucleoprotein [Arabidopsis thaliana]
Length = 382
Score = 89.0 bits (219), Expect = 5e-17
Identities = 64/142 (45%), Positives = 75/142 (52%), Gaps = 14/142 (9%)
Frame = -1
Query: 634 TVEDANRCVKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSTRDR----DYGHR-- 473
+V DANRC++ L+ SVL+GR ITVE++RR+R RTPTPG YLGL++ R R Y R
Sbjct: 125 SVGDANRCIRSLDHSVLQGRVITVEKARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRS 184
Query: 472 ---GGDRGRYRGGGGGGSGRDDYQHR-RSPRRSP-YRGGRDYSPRRSSPYAGRSRRERSR 308
R R G S Y R RS SP YR R YSP RS R R R R
Sbjct: 185 VSCSRSRSRSYSSDRGRSYSPSYGRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRDR 244
Query: 307 SLPYSPY---ASPDRRYARGSR 251
S YSPY R Y+R R
Sbjct: 245 S--YSPYYRRRDRSRSYSRNCR 264
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 598,791,039
Number of Sequences: 1393205
Number of extensions: 16104650
Number of successful extensions: 141859
Number of sequences better than 10.0: 1151
Number of HSP's better than 10.0 without gapping: 68065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115648
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
