Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004401A_C01 KMC004401A_c01
(645 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T04665 probable serine/threonine-specific protein kinase (E... 46 4e-04
ref|NP_195285.2| protein kinase - like protein; protein id: At4g... 46 4e-04
gb|AAL38844.1| putative protein kinase [Arabidopsis thaliana] gi... 46 4e-04
pir||C85420 protein kinase-like protein [imported] - Arabidopsis... 46 4e-04
pir||E84549 probable protein kinase [imported] - Arabidopsis tha... 45 8e-04
>pir||T04665 probable serine/threonine-specific protein kinase (EC 2.7.1.-)
F8D20.110 - Arabidopsis thaliana (fragment)
gi|3367578|emb|CAA20030.1| protein kinase - like protein
[Arabidopsis thaliana]
Length = 356
Score = 46.2 bits (108), Expect = 4e-04
Identities = 22/38 (57%), Positives = 28/38 (72%)
Frame = -2
Query: 641 CLEPDPKNRPSMKDVVETLEGIKAVNNNYNISNKHSTK 528
C+EPDPKNRP MK+VVE LE I+ +N + N+ STK
Sbjct: 284 CIEPDPKNRPHMKEVVEVLEHIQGLN---VVPNRSSTK 318
>ref|NP_195285.2| protein kinase - like protein; protein id: At4g35600.1, supported
by cDNA: gi_166831 [Arabidopsis thaliana]
Length = 274
Score = 46.2 bits (108), Expect = 4e-04
Identities = 22/38 (57%), Positives = 28/38 (72%)
Frame = -2
Query: 641 CLEPDPKNRPSMKDVVETLEGIKAVNNNYNISNKHSTK 528
C+EPDPKNRP MK+VVE LE I+ +N + N+ STK
Sbjct: 202 CIEPDPKNRPHMKEVVEVLEHIQGLN---VVPNRSSTK 236
>gb|AAL38844.1| putative protein kinase [Arabidopsis thaliana]
gi|20465931|gb|AAM20151.1| putative protein kinase
[Arabidopsis thaliana]
Length = 419
Score = 46.2 bits (108), Expect = 4e-04
Identities = 22/38 (57%), Positives = 28/38 (72%)
Frame = -2
Query: 641 CLEPDPKNRPSMKDVVETLEGIKAVNNNYNISNKHSTK 528
C+EPDPKNRP MK+VVE LE I+ +N + N+ STK
Sbjct: 347 CIEPDPKNRPHMKEVVEVLEHIQGLN---VVPNRSSTK 381
>pir||C85420 protein kinase-like protein [imported] - Arabidopsis thaliana
gi|7270511|emb|CAB80276.1| protein kinase-like protein
[Arabidopsis thaliana]
Length = 415
Score = 46.2 bits (108), Expect = 4e-04
Identities = 22/38 (57%), Positives = 28/38 (72%)
Frame = -2
Query: 641 CLEPDPKNRPSMKDVVETLEGIKAVNNNYNISNKHSTK 528
C+EPDPKNRP MK+VVE LE I+ +N + N+ STK
Sbjct: 343 CIEPDPKNRPHMKEVVEVLEHIQGLN---VVPNRSSTK 377
>pir||E84549 probable protein kinase [imported] - Arabidopsis thaliana
Length = 413
Score = 45.1 bits (105), Expect = 8e-04
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = -2
Query: 644 KCLEPDPKNRPSMKDVVETLEGIKAVN 564
KCL P+PKNRPSMK+VVE+LE I+A N
Sbjct: 347 KCLGPEPKNRPSMKEVVESLELIEAAN 373
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,073,897
Number of Sequences: 1393205
Number of extensions: 10818771
Number of successful extensions: 29252
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 28085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29198
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
