Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004400A_C01 KMC004400A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196729.1| putative protein; protein id: At5g11680.1, supp... 169 2e-41
ref|NP_705571.1| hypothetical protein [Plasmodium falciparum 3D7... 38 0.056
gb|EAA16081.1| arabinogalactan protein [Plasmodium yoelii yoelii] 34 1.1
sp|Q15149|PLE1_HUMAN Plectin 1 (PLTN) (PCN) (Hemidesmosomal prot... 33 1.8
ref|NP_000436.1| plectin 1, intermediate filament binding protei... 33 1.8
>ref|NP_196729.1| putative protein; protein id: At5g11680.1, supported by cDNA: 403.,
supported by cDNA: gi_17065569, supported by cDNA:
gi_17380651, supported by cDNA: gi_20148562 [Arabidopsis
thaliana] gi|11358224|pir||T48527 hypothetical protein
T22P22.70 - Arabidopsis thaliana
gi|7573382|emb|CAB87686.1| putative protein [Arabidopsis
thaliana] gi|17065570|gb|AAL32939.1| putative protein
[Arabidopsis thaliana] gi|17380652|gb|AAL36156.1|
unknown protein [Arabidopsis thaliana]
gi|20148563|gb|AAM10172.1| putative protein [Arabidopsis
thaliana] gi|21436275|gb|AAM51276.1| unknown protein
[Arabidopsis thaliana] gi|21593584|gb|AAM65551.1|
unknown [Arabidopsis thaliana]
Length = 207
Score = 169 bits (427), Expect = 2e-41
Identities = 80/105 (76%), Positives = 92/105 (87%), Gaps = 3/105 (2%)
Frame = -1
Query: 499 VEPVVPDDQHRALYSTHTFKILFKEGGCGTFIPLFFNLIASVRQYNQRANAQAQTQA--- 329
VEPVVP+++HRALYSTH+FKILFKEGGCGTF+PLF NLI+SVRQYN++ A+ A
Sbjct: 96 VEPVVPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQYNRQMQQAAEAAAAAP 155
Query: 328 RVDPLQAAQTPVDEMMRHAYVDPNDPTRIFLQQPNADSQLRRRTY 194
VDPLQAAQTPVDEMMRHAYVDPNDPTRI+LQQP+ +SQLRRR Y
Sbjct: 156 HVDPLQAAQTPVDEMMRHAYVDPNDPTRIYLQQPSGESQLRRRAY 200
>ref|NP_705571.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615816|emb|CAD52808.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 450
Score = 38.1 bits (87), Expect = 0.056
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = -1
Query: 499 VEPVVPDDQHRALYSTHTFKILFKEGGCGTFIPLFFNLIASVRQYNQRANAQAQTQARVD 320
++P++ D +L S + ++F G C +F+ +FF + + ++
Sbjct: 98 IKPLI--DHPNSLKSACKWNLVFLNGQCSSFLNIFFKVFEAAKKNR-------------- 141
Query: 319 PLQAAQTPVDEMMRH--AYVDPNDPTRIFLQQPNADSQLRRRTYQPQ 185
PL ++ + AYVDPNDPT +++ +P + Y PQ
Sbjct: 142 PLVGLNEFNEQFFSNSNAYVDPNDPTFLYINEP-----INENIYTPQ 183
>gb|EAA16081.1| arabinogalactan protein [Plasmodium yoelii yoelii]
Length = 366
Score = 33.9 bits (76), Expect = 1.1
Identities = 21/95 (22%), Positives = 41/95 (43%)
Frame = -1
Query: 499 VEPVVPDDQHRALYSTHTFKILFKEGGCGTFIPLFFNLIASVRQYNQRANAQAQTQARVD 320
V P+V + +L S + ++F G C F+ FF + ++ + +
Sbjct: 98 VRPLV--EHPNSLSSPCKWNLIFLNGQCSNFLNYFFKAYEAAKKNKTLGSLNEFNEHFFS 155
Query: 319 PLQAAQTPVDEMMRHAYVDPNDPTRIFLQQPNADS 215
+AY+DPNDPT I++ +P +++
Sbjct: 156 S------------NNAYIDPNDPTFIYINEPISEN 178
>sp|Q15149|PLE1_HUMAN Plectin 1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)
gi|25296163|pir||A59404 plectin [imported] - human
gi|1296662|emb|CAA91196.1| plectin [Homo sapiens]
Length = 4684
Score = 33.1 bits (74), Expect = 1.8
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Frame = -1
Query: 496 EPVVPDDQHRALYSTHTFKILFKEGGCGTFIPLFFNLIAS--VRQYNQRA-NAQAQTQAR 326
E VV + H L S +K+ G I LF + VR++ R AQ T
Sbjct: 2893 EGVVGPELHHKLLSAERAVTGYKDPYTGQQISLFQAMQKGLIVREHGIRLLEAQIATGGV 2952
Query: 325 VDPLQAAQTPVDEMMRHAY---------VDPNDPTRIFLQQPNADSQL 209
+DP+ + + PVD R Y DP+D T+ F PN L
Sbjct: 2953 IDPVHSHRVPVDVAYRRGYFDEEMNRVLADPSDDTKGFF-DPNTHENL 2999
>ref|NP_000436.1| plectin 1, intermediate filament binding protein 500kDa; plectin 1,
intermediate filament binding protein, 500kD [Homo
sapiens] gi|7442004|pir||G02520 plectin - human
gi|1477646|gb|AAB05427.1| plectin [Homo sapiens]
gi|1477651|gb|AAB05428.1| plectin [Homo sapiens]
Length = 4574
Score = 33.1 bits (74), Expect = 1.8
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Frame = -1
Query: 496 EPVVPDDQHRALYSTHTFKILFKEGGCGTFIPLFFNLIAS--VRQYNQRA-NAQAQTQAR 326
E VV + H L S +K+ G I LF + VR++ R AQ T
Sbjct: 2783 EGVVGPELHHKLLSAERAVTGYKDPYTGQQISLFQAMQKGLIVREHGIRLLEAQIATGGV 2842
Query: 325 VDPLQAAQTPVDEMMRHAY---------VDPNDPTRIFLQQPNADSQL 209
+DP+ + + PVD R Y DP+D T+ F PN L
Sbjct: 2843 IDPVHSHRVPVDVAYRRGYFDEEMNRVLADPSDDTKGFF-DPNTHENL 2889
Score = 32.3 bits (72), Expect = 3.1
Identities = 31/109 (28%), Positives = 45/109 (40%), Gaps = 12/109 (11%)
Frame = -1
Query: 490 VVPDDQHRALYSTHTFKILFKEGGCGTFIPLFFNLIASV--RQYNQRA-NAQAQTQARVD 320
VV + H L S +++ G+ I LF + + RQ+ R AQ T +D
Sbjct: 3444 VVGPELHEQLLSAEKAVTGYRDPYSGSTISLFQAMQKGLVLRQHGIRLLEAQIATGGIID 3503
Query: 319 PLQAAQTPVD---------EMMRHAYVDPNDPTRIFLQQPNADSQLRRR 200
P+ + + PVD E M DP+D T+ F PN L R
Sbjct: 3504 PVHSHRVPVDVAYQRGYFSEEMNRVLADPSDDTKGFF-DPNTHENLTYR 3551
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,770,728
Number of Sequences: 1393205
Number of extensions: 8504054
Number of successful extensions: 18022
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 17461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18004
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
