Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004398A_C01 KMC004398A_c01
(738 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL62332.1|AF461048_1 aminotransferase 2 [Cucumis melo] 277 1e-73
gb|AAL47679.1| aminotransferase 1 [Cucumis melo] 276 2e-73
gb|AAB95218.1| putative serine-glyoxylate aminotransferase [Frit... 271 9e-72
ref|NP_178969.1| alanine-glyoxylate aminotransferase; protein id... 264 1e-69
gb|ZP_00048894.1| hypothetical protein [Magnetospirillum magneto... 181 1e-44
>gb|AAL62332.1|AF461048_1 aminotransferase 2 [Cucumis melo]
Length = 401
Score = 277 bits (708), Expect = 1e-73
Identities = 135/153 (88%), Positives = 145/153 (94%)
Frame = -3
Query: 736 YTPSIQLLYGLRTALDLLFEEGLENVFARHKRLGKATRIAVEAWALKNCTPKEEWFSDTV 557
YTPSIQLLYGLR ALDL+FEEGLENV ARHKRLG+ATR+AVEAW LKNCT KEEW SDTV
Sbjct: 249 YTPSIQLLYGLRPALDLVFEEGLENVIARHKRLGQATRLAVEAWGLKNCTQKEEWHSDTV 308
Query: 556 TAVVVPPYIDGAEVVKRSWKRYNMSLGLGLNKVAGKVFRIGHLGNLNELQLLGALAGVEM 377
TAVVVPPYID AE+V+R+WKRYN+SLGLGLNKVAGKVFRIGHLGNLNELQLLG LAGVEM
Sbjct: 309 TAVVVPPYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEM 368
Query: 376 ILQDVGYPVKLGSGVAAASAYLQNTIPMIPSRI 278
IL+DVGYPVKLGSGVAAAS+YLQN IP+IPSRI
Sbjct: 369 ILKDVGYPVKLGSGVAAASSYLQNNIPLIPSRI 401
>gb|AAL47679.1| aminotransferase 1 [Cucumis melo]
Length = 401
Score = 276 bits (706), Expect = 2e-73
Identities = 134/153 (87%), Positives = 144/153 (93%)
Frame = -3
Query: 736 YTPSIQLLYGLRTALDLLFEEGLENVFARHKRLGKATRIAVEAWALKNCTPKEEWFSDTV 557
YTPSIQLLYGLR ALDLLFEEGL+NV ARH RLGKATR+AVEAW LKNCT KEEWFSDTV
Sbjct: 249 YTPSIQLLYGLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308
Query: 556 TAVVVPPYIDGAEVVKRSWKRYNMSLGLGLNKVAGKVFRIGHLGNLNELQLLGALAGVEM 377
TAV+VP YID AE+V+R+WKRYN+SLGLGLNKVAGKVFRIGHLGNLNELQLLG LAGVEM
Sbjct: 309 TAVLVPSYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEM 368
Query: 376 ILQDVGYPVKLGSGVAAASAYLQNTIPMIPSRI 278
+L+DVGYPVKLGSGVAAASAYLQN IP+IPSRI
Sbjct: 369 VLKDVGYPVKLGSGVAAASAYLQNNIPLIPSRI 401
>gb|AAB95218.1| putative serine-glyoxylate aminotransferase [Fritillaria agrestis]
Length = 401
Score = 271 bits (692), Expect = 9e-72
Identities = 129/153 (84%), Positives = 143/153 (93%)
Frame = -3
Query: 736 YTPSIQLLYGLRTALDLLFEEGLENVFARHKRLGKATRIAVEAWALKNCTPKEEWFSDTV 557
YTPSIQ+LYGLR ALDL+FEEGL+NV ARH RLGKATR+AVEAW LKNCT KEEW SDTV
Sbjct: 249 YTPSIQMLYGLRAALDLIFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQKEEWHSDTV 308
Query: 556 TAVVVPPYIDGAEVVKRSWKRYNMSLGLGLNKVAGKVFRIGHLGNLNELQLLGALAGVEM 377
TAVVVPPYID +E+V+R+WKRYN+SLGLGLNKVAGKVFRIGHLGNLNELQLLG L+GVEM
Sbjct: 309 TAVVVPPYIDSSEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLSGVEM 368
Query: 376 ILQDVGYPVKLGSGVAAASAYLQNTIPMIPSRI 278
+L+DVGYPVKLGSGVAAA+ YLQN+ PMIPSRI
Sbjct: 369 VLKDVGYPVKLGSGVAAAATYLQNSTPMIPSRI 401
>ref|NP_178969.1| alanine-glyoxylate aminotransferase; protein id: At2g13360.1,
supported by cDNA: 8306., supported by cDNA:
gi_12082306, supported by cDNA: gi_20465424, supported
by cDNA: gi_21281088, supported by cDNA: gi_3288820
[Arabidopsis thaliana] gi|25287370|pir||T52250 probable
alanine-glyoxylate transaminase (EC 2.6.1.44) [imported]
- Arabidopsis thaliana gi|3288821|gb|AAC26854.1|
alanine:glyoxylate aminotransferase; transaminase
[Arabidopsis thaliana] gi|4733989|gb|AAD28669.1|
alanine-glyoxylate aminotransferase [Arabidopsis
thaliana] gi|12082307|dbj|BAB20811.1| serine glyoxylate
aminotransferase [Arabidopsis thaliana]
gi|20465425|gb|AAM20136.1| putative alanine-glyoxylate
aminotransferase [Arabidopsis thaliana]
gi|21281089|gb|AAM45058.1| putative alanine-glyoxylate
aminotransferase [Arabidopsis thaliana]
Length = 401
Score = 264 bits (674), Expect = 1e-69
Identities = 126/153 (82%), Positives = 143/153 (93%)
Frame = -3
Query: 736 YTPSIQLLYGLRTALDLLFEEGLENVFARHKRLGKATRIAVEAWALKNCTPKEEWFSDTV 557
YTPSIQLLYGLR ALDL+FEEGLEN+ ARH RLGKATR+AVEAW LKNCT KEEW S+TV
Sbjct: 249 YTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTV 308
Query: 556 TAVVVPPYIDGAEVVKRSWKRYNMSLGLGLNKVAGKVFRIGHLGNLNELQLLGALAGVEM 377
TAV+VPP+IDG+E+V+R+W+RYN+SLGLGLNKVAGKVFRIGHLGN+NELQLLG LAGVEM
Sbjct: 309 TAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEM 368
Query: 376 ILQDVGYPVKLGSGVAAASAYLQNTIPMIPSRI 278
IL+DVGYPV +GSGVAAAS YLQ+ IP+IPSRI
Sbjct: 369 ILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401
>gb|ZP_00048894.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 244
Score = 181 bits (458), Expect = 1e-44
Identities = 90/143 (62%), Positives = 110/143 (75%)
Frame = -3
Query: 736 YTPSIQLLYGLRTALDLLFEEGLENVFARHKRLGKATRIAVEAWALKNCTPKEEWFSDTV 557
YTP + LLYGLR AL LFEEGLENV+ RH LG+ATR AV AW LK C EW SDTV
Sbjct: 95 YTPPLPLLYGLREALACLFEEGLENVYHRHAVLGEATRQAVAAWGLKTCAKSSEWNSDTV 154
Query: 556 TAVVVPPYIDGAEVVKRSWKRYNMSLGLGLNKVAGKVFRIGHLGNLNELQLLGALAGVEM 377
TA++ P +D A+++K ++ RYN++LG GL++VAGKVFRIGH+G+LNEL LLGA+AG EM
Sbjct: 155 TAILAPEGVDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIGHVGDLNELSLLGAIAGAEM 214
Query: 376 ILQDVGYPVKLGSGVAAASAYLQ 308
L D G V GSGVAAAS+YL+
Sbjct: 215 SLIDNGVNVTPGSGVAAASSYLR 237
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 638,983,702
Number of Sequences: 1393205
Number of extensions: 14344912
Number of successful extensions: 37195
Number of sequences better than 10.0: 137
Number of HSP's better than 10.0 without gapping: 35556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37054
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35188080875
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
