KMC004396A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC004396A_C01 KMC004396A_c01
AGCCGAGAGAACAAATGTTAAAAATTCATTGAGGACAGAGGTACAGACAAATTCACATTA
AATAACTTGAATTTAAGTTTTTTCAACTTTGATCATATATCGTATGATATTATTTAGTGT
TACAGTAATGCTATTTCGAGCCTTTAATCGAAGTCCCTAAAAAACTCTCATGATGAACTA
GCACTGTTCTGATTCCAGGATTGGATCTCCTTTTTTTCAGCTTAGCTTATTTGAGCTTTC
TTCATGCTCCAAGCGCTCAATCTCGCGATCTTGACATCAGCAGTTCCATTGTTAAAAGCG
TAAATTTGTGCTTTATCATTTATGGCCAATGTGGGATAAACTCTGGCTGTGATGCAAGCC
TTTCCTTCTCCTCCAAAACTCTCCACAACAGAGTGATCAATCAAGGCTCTCAATGACAGC
TTCTCATAAATAATGTTCACATCAACAAAAGTTCCATAAGTGGTCCTATCATTTTCTTTA
TTCA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004396A_C01 KMC004396A_c01
(484 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T12095 beta-fructofuranosidase (EC 3.2.1.26), cell wall - f... 147 6e-35
pir||T06380 beta-fructofuranosidase (EC 3.2.1.26) - garden pea g... 140 1e-32
emb|CAD19322.1| exocellular acid invertase 1 [Beta vulgaris] 125 2e-28
emb|CAB95010.1| invertase [Beta vulgaris] 125 2e-28
emb|CAA57389.1| beta-fructofuranosidase [Chenopodium rubrum] 122 3e-27
>pir||T12095 beta-fructofuranosidase (EC 3.2.1.26), cell wall - fava bean
gi|861157|emb|CAA84527.1| cell wall invertase II;
beta-furanofructosidase [Vicia faba]
Length = 581
Score = 147 bits (371), Expect = 6e-35
Identities = 68/86 (79%), Positives = 80/86 (92%)
Frame = -3
Query: 482 NKENDRTTYGTFVDVNIIYEKLSLRALIDHSVVESFGGEGKACITARVYPTLAINDKAQI 303
NK+ND T+YGTF+DV++++EKLSLR LIDHSVVESFGGEGKACITARVYPTLA+NDKA I
Sbjct: 493 NKDNDLTSYGTFIDVDVLHEKLSLRTLIDHSVVESFGGEGKACITARVYPTLAVNDKALI 552
Query: 302 YAFNNGTADVKIARLSAWSMKKAQIS 225
YAFNNGT DVKI L+AWSMKKA+++
Sbjct: 553 YAFNNGTTDVKITSLNAWSMKKARLN 578
>pir||T06380 beta-fructofuranosidase (EC 3.2.1.26) - garden pea
gi|3152880|gb|AAC17166.1| cell wall invertase;
beta-fructofuranosidase [Pisum sativum]
Length = 582
Score = 140 bits (352), Expect = 1e-32
Identities = 66/84 (78%), Positives = 77/84 (91%)
Frame = -3
Query: 482 NKENDRTTYGTFVDVNIIYEKLSLRALIDHSVVESFGGEGKACITARVYPTLAINDKAQI 303
NK+ND T+YGTFVDV+ ++EKLSLR LIDHSVVESFGGEG+AC+TARVYPTLAI+DKA +
Sbjct: 490 NKDNDMTSYGTFVDVDPLHEKLSLRTLIDHSVVESFGGEGRACVTARVYPTLAIHDKAML 549
Query: 302 YAFNNGTADVKIARLSAWSMKKAQ 231
YAFNNGT+ VKI LSAWSMKKA+
Sbjct: 550 YAFNNGTSAVKITSLSAWSMKKAK 573
>emb|CAD19322.1| exocellular acid invertase 1 [Beta vulgaris]
Length = 567
Score = 125 bits (314), Expect = 2e-28
Identities = 62/86 (72%), Positives = 71/86 (82%)
Frame = -3
Query: 482 NKENDRTTYGTFVDVNIIYEKLSLRALIDHSVVESFGGEGKACITARVYPTLAINDKAQI 303
N ND+TTYGTFVDVN I E LSLR LIDHSVVESFG +GK ITARVYPTLAIN+KA +
Sbjct: 482 NPTNDKTTYGTFVDVNPIREGLSLRVLIDHSVVESFGAKGKNVITARVYPTLAINEKAHL 541
Query: 302 YAFNNGTADVKIARLSAWSMKKAQIS 225
Y FN GT++V+I L+AWSMKKA I+
Sbjct: 542 YVFNRGTSNVEITGLTAWSMKKANIA 567
>emb|CAB95010.1| invertase [Beta vulgaris]
Length = 501
Score = 125 bits (314), Expect = 2e-28
Identities = 62/86 (72%), Positives = 71/86 (82%)
Frame = -3
Query: 482 NKENDRTTYGTFVDVNIIYEKLSLRALIDHSVVESFGGEGKACITARVYPTLAINDKAQI 303
N ND+TTYGTFVDVN I E LSLR LIDHSVVESFG +GK ITARVYPTLAIN+KA +
Sbjct: 416 NPTNDKTTYGTFVDVNPIREGLSLRVLIDHSVVESFGAKGKNVITARVYPTLAINEKAHL 475
Query: 302 YAFNNGTADVKIARLSAWSMKKAQIS 225
Y FN GT++V+I L+AWSMKKA I+
Sbjct: 476 YVFNRGTSNVEITGLTAWSMKKANIA 501
>emb|CAA57389.1| beta-fructofuranosidase [Chenopodium rubrum]
Length = 573
Score = 122 bits (305), Expect = 3e-27
Identities = 60/87 (68%), Positives = 71/87 (80%), Gaps = 1/87 (1%)
Frame = -3
Query: 482 NKENDRTTYGTFVDVNIIYEKLSLRALIDHSVVESFGGEGKACITARVYPTLAINDKA-Q 306
N ND+TTYG+FVDVN + E LSLR LIDHSVVESFG + K C+TARVYPTLAIN+KA
Sbjct: 487 NPTNDKTTYGSFVDVNPVREDLSLRVLIDHSVVESFGAKRKECVTARVYPTLAINEKACN 546
Query: 305 IYAFNNGTADVKIARLSAWSMKKAQIS 225
+Y FNNG +DV+I L+AWSMKKA I+
Sbjct: 547 LYVFNNGKSDVEITGLTAWSMKKASIA 573
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 341,986,412
Number of Sequences: 1393205
Number of extensions: 6132420
Number of successful extensions: 13424
Number of sequences better than 10.0: 220
Number of HSP's better than 10.0 without gapping: 13208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13412
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MR034h12_f |
BP078665 |
1 |
371 |
2 |
MWL031f10_f |
AV769089 |
1 |
484 |
3 |
MWM079d06_f |
AV766004 |
8 |
315 |
4 |
MR099c05_f |
BP083570 |
71 |
215 |
|
Lotus japonicus
Kazusa DNA Research Institute