>KMC004393A_C01 KMC004393A_c01
GAGCAAATTCATCATCAAATAATATGACTCATTAAGAGTCTCAGTACTTAGTACATAAGG
AAATCAGGAATTCTAGTCAAAGAAGAAATACACAATTAAGTAACATGAACTTATTGTTTT
CTTTTAAGCAGGGTGAACCCTGAAATTGTGGAACTAGTTTACTTGAGTTCATCTAGCATA
CAGAAATTAACCCCACACTGGAGTAAGATTAGAATTTCAAACGATTGCCTTACATCAGGC
ATTAAAGTCTTCTATAGAATCGAACAATGTACAACTCACCTCTACGGGACAAAAAAACTT
GACAAGGACGAGACAAGTCTTTCACAATAGAGGCTCCCGGATTTAGTTGAAGAATTCACA
ACCAAATATGCCAATCAGATCTGCTTCCATTAGTTTCTACTGAGTGAGTGTAACGCATAT
TTATTACCACCTGCAGAGATAAATGCCAAACTTATTCCTTTTGCCTCTCCTGCCATCAAT
GAACTTCCTAAGCAGTAACGTTCCGGATTATTTGGAGCTGCAGCCGAATTCCCGGACAAC
CACCGAATAAATCAACATAGAGGAAGCCCTAACGACATACAG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC004393A_C01 KMC004393A_c01
         (582 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_376982.1| 177aa long hypothetical protein [Sulfolobus tok...    32  7.6

>ref|NP_376982.1| 177aa long hypothetical protein [Sulfolobus tokodaii]
           gi|15622098|dbj|BAB66091.1| 177aa long hypothetical
           protein [Sulfolobus tokodaii]
          Length = 177

 Score = 31.6 bits (70), Expect = 7.6
 Identities = 30/117 (25%), Positives = 54/117 (45%)
 Frame = +2

Query: 227 ALHQALKSSIESNNVQLTSTGQKNLTRTRQVFHNRGSRI*LKNSQPNMPIRSASISFY*V 406
           ALHQ   SS   + V L  TG + +T T Q    + +   +  +   +  ++ S SF   
Sbjct: 28  ALHQ---SSKPVSQVPLNLTGVQIITTTTQTTTPKQNTTSVTQTTTTISNQTYSFSF--- 81

Query: 407 SVTHIYYHLQR*MPNLFLLPLLPSMNFLSSNVPDYLELQPNSRTTTE*INIEEALTT 577
               + +HL+   P ++++ + P +NF S  V  Y +   + +T +  +NI  A  T
Sbjct: 82  ---KVKFHLKVDKPGIYIIGIKPKVNFSSLYVLLYFD---DGKTVSLNLNITSANVT 132

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,277,157
Number of Sequences: 1393205
Number of extensions: 8882198
Number of successful extensions: 16817
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16817
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MR034e03_f BP078629 1 316 2 MWL058a05_f AV769581 1 582

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