Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004386A_C01 KMC004386A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176516.1| ABC transporter family protein; protein id: At1... 86 4e-16
gb|ZP_00056254.1| hypothetical protein [Magnetospirillum magneto... 59 4e-08
ref|NP_798602.1| heme exporter protein A [Vibrio parahaemolyticu... 55 4e-07
ref|NP_044792.1| ATP-binding subunit of ABC transporter for cyto... 53 2e-06
ref|NP_760834.1| Putative heme exporter protein A [Vibrio vulnif... 53 2e-06
>ref|NP_176516.1| ABC transporter family protein; protein id: At1g63270.1
[Arabidopsis thaliana] gi|25297215|pir||E96658
hypothetical protein F9N12.11 [imported] - Arabidopsis
thaliana gi|12324363|gb|AAG52155.1|AC022355_16
hypothetical protein; 38474-39163 [Arabidopsis thaliana]
Length = 229
Score = 85.5 bits (210), Expect = 4e-16
Identities = 42/52 (80%), Positives = 47/52 (89%)
Frame = -2
Query: 510 LPMGQRKRLQLGRLLAIDRLIWLLDEPLVALDDEGVKLLE*VIAEHKKQGGM 355
L MGQRKRLQL RLLAIDR IWLLDEP VALDDEGV+LLE +IAEH+K+GG+
Sbjct: 139 LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVRLLEYIIAEHRKKGGI 190
Score = 62.0 bits (149), Expect = 5e-09
Identities = 41/103 (39%), Positives = 56/103 (53%), Gaps = 7/103 (6%)
Frame = -1
Query: 550 MGLGRLAKEKPRMFAYGTKEKAATWEIARN*SPHMV-----AG*TFSGIR**RCEVTRVS 386
MGLGRL KEK RM + G +++ + P + G+R +
Sbjct: 126 MGLGRLVKEKSRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVR-------LLE 178
Query: 385 YC*AQETRRN--VIEATHLPIEIEDSMGLRLPPRFPRRMTSVD 263
Y A+ ++ VI ATHLPI+IED+M LRLPPRFPR+MT +D
Sbjct: 179 YIIAEHRKKGGIVIVATHLPIDIEDAMILRLPPRFPRKMTLID 221
>gb|ZP_00056254.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 397
Score = 58.9 bits (141), Expect = 4e-08
Identities = 28/52 (53%), Positives = 35/52 (66%)
Frame = -2
Query: 510 LPMGQRKRLQLGRLLAIDRLIWLLDEPLVALDDEGVKLLE*VIAEHKKQGGM 355
L GQ++R L RLLA +WLLDEP ALD +K+LE V+AEH+ GGM
Sbjct: 304 LSAGQKRRTNLARLLAAPSPLWLLDEPTTALDKASIKVLEDVLAEHRANGGM 355
>ref|NP_798602.1| heme exporter protein A [Vibrio parahaemolyticus RIMD 2210633]
gi|28807216|dbj|BAC60486.1| heme exporter protein A
[Vibrio parahaemolyticus]
Length = 205
Score = 55.5 bits (132), Expect = 4e-07
Identities = 24/52 (46%), Positives = 37/52 (71%)
Frame = -2
Query: 510 LPMGQRKRLQLGRLLAIDRLIWLLDEPLVALDDEGVKLLE*VIAEHKKQGGM 355
L GQ++R+ L RL +++W+LDEPL A+D +GVK+LE + A+H GG+
Sbjct: 131 LSAGQQRRVALARLWLSKQILWILDEPLTAIDKQGVKVLEALFAQHADNGGI 182
>ref|NP_044792.1| ATP-binding subunit of ABC transporter for cytochrome c1
[Reclinomonas americana] gi|7442623|pir||S78174 probable
transport protein yejW - Reclinomonas americana (ATCC
50394) mitochondrion gi|2258373|gb|AAD11907.1|
ATP-binding subunit of ABC transporter for cytochrome c1
[Reclinomonas americana]
Length = 222
Score = 53.1 bits (126), Expect = 2e-06
Identities = 22/57 (38%), Positives = 38/57 (66%)
Frame = -2
Query: 525 KSQGCLPMGQRKRLQLGRLLAIDRLIWLLDEPLVALDDEGVKLLE*VIAEHKKQGGM 355
K L +GQ+KRL + +LL ++ +W+LDEPL+ LD +K+ ++ +H K+GG+
Sbjct: 133 KKISTLSLGQKKRLLISKLLLTNKQLWILDEPLIGLDKYWIKIFSTILLKHCKRGGI 189
>ref|NP_760834.1| Putative heme exporter protein A [Vibrio vulnificus CMCP6]
gi|27361453|gb|AAO10361.1|AE016803_148 Putative heme
exporter protein A [Vibrio vulnificus CMCP6]
Length = 205
Score = 53.1 bits (126), Expect = 2e-06
Identities = 23/52 (44%), Positives = 36/52 (69%)
Frame = -2
Query: 510 LPMGQRKRLQLGRLLAIDRLIWLLDEPLVALDDEGVKLLE*VIAEHKKQGGM 355
L GQ++R+ L RL +++W+LDEPL A+D +GVK+LE + + H GG+
Sbjct: 131 LSAGQQRRVALARLWLSHQILWILDEPLTAIDKQGVKVLESLFSNHVDNGGI 182
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,342,350
Number of Sequences: 1393205
Number of extensions: 8290600
Number of successful extensions: 32905
Number of sequences better than 10.0: 1788
Number of HSP's better than 10.0 without gapping: 29303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32284
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
