Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004385A_C01 KMC004385A_c01
(850 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB19331.1| contains EST AU031225(E61165),D15191(C0235)~unkn... 84 3e-15
ref|NP_196435.1| nhp2-like protein; protein id: At5g08180.1, sup... 70 3e-11
gb|AAA62273.1| ORF2 45 0.002
pir||S36954 cytochrome-c oxidase (EC 1.9.3.1) chain III - Herpet... 42 0.015
pir||S51908 cryptogene protein G1(ND9) - Leishmania tarentolae (... 41 0.026
>dbj|BAB19331.1| contains EST AU031225(E61165),D15191(C0235)~unknown protein [Oryza
sativa (japonica cultivar-group)]
gi|23589940|dbj|BAC20622.1| contains EST
AU031225(E61165)~nhp2-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 150
Score = 84.0 bits (206), Expect = 3e-15
Identities = 39/56 (69%), Positives = 48/56 (85%)
Frame = -2
Query: 627 SKEDLASAGATKRHTCCVLVLTKPAKGEMKQGEHEKLNSDYDQVVSDVTEITVSLF 460
SKEDLA+AG TKR TCCVLVLTKPAKGE+++ EKL +DYDQV+S+V E+T S+F
Sbjct: 95 SKEDLATAGTTKRPTCCVLVLTKPAKGELEEDVKEKLKTDYDQVMSEVAEVTSSMF 150
>ref|NP_196435.1| nhp2-like protein; protein id: At5g08180.1, supported by cDNA:
gi_14190414, supported by cDNA: gi_15215892 [Arabidopsis
thaliana] gi|11358578|pir||T50503 nhp2-like protein -
Arabidopsis thaliana gi|8346555|emb|CAB93719.1|
nhp2-like protein [Arabidopsis thaliana]
gi|14190415|gb|AAK55688.1|AF378885_1 AT5g08180/T22D6_120
[Arabidopsis thaliana] gi|15215893|gb|AAK91490.1|
AT5g08180/T22D6_120 [Arabidopsis thaliana]
Length = 156
Score = 70.5 bits (171), Expect = 3e-11
Identities = 33/55 (60%), Positives = 41/55 (74%)
Frame = -2
Query: 627 SKEDLASAGATKRHTCCVLVLTKPAKGEMKQGEHEKLNSDYDQVVSDVTEITVSL 463
SKEDLA AGATKR TCCVLV+ KPAKG++ E KL +DY+QV D+ E+ S+
Sbjct: 101 SKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155
>gb|AAA62273.1| ORF2
Length = 141
Score = 44.7 bits (104), Expect = 0.002
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = -1
Query: 307 LYVFVCFFYGPLFFCYCC--CLCLVCWCSRSS*KG*MLLLLCHVSAATFFLLLLFVDLIL 134
+ +F+ FFY L F YCC +CLV +C + C + + L F+ ++
Sbjct: 71 IILFIFFFYFVLCFLYCCFYLVCLVFFC----------IFCCVLCYFLIYFLCCFLFWVV 120
Query: 133 FVLFLFVFFTLCCFPLCFLL 74
F LFLF FF CF L LL
Sbjct: 121 F-LFLFFFFVYVCFYLWLLL 139
Score = 44.3 bits (103), Expect = 0.002
Identities = 34/140 (24%), Positives = 56/140 (39%), Gaps = 8/140 (5%)
Frame = -3
Query: 401 CMDFVITLCGSTFCCYESCTSLALIKKTLLDLVCVCLFFLW-SFVFLLLLLPLFSLLVQP 225
C+ + T+ G +CC+ + C C F+W F+ ++++ F L
Sbjct: 10 CVCVLCTVYGIFYCCF---------------VFCFCCLFVWVCFICFVIVVCFFLLFWVV 54
Query: 224 VFMKRVDV-------VVVVSRFCCYLFLAAAVC*SYFICAVFVCIFYSLLFSFMFSLVLD 66
+F D V+++ F Y L C Y +C VF CIF +L F+ L
Sbjct: 55 IFYWCFDCIVYFFCDVIILFIFFFYFVLCFLYCCFYLVCLVFFCIFCCVLCYFLI-YFLC 113
Query: 65 SNLTWERLFPRFSFYPFMIF 6
L W F F+ ++ F
Sbjct: 114 CFLFWVVFLFLFFFFVYVCF 133
Score = 38.1 bits (87), Expect = 0.17
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Frame = -2
Query: 441 ICTVGSSWISNLLMYGFCYNFMWL-----------YILLL*KLYFPCLD*KNPTRPCMCL 295
+CTV + ++ FC F+W+ ++L +++ C D C+
Sbjct: 14 LCTVYGIFYC-CFVFCFCCLFVWVCFICFVIVVCFFLLFWVVIFYWCFD-------CIVY 65
Query: 294 FVFSMVLCFSAIAVAFV*FAGAAGLHEKGRCC--CCCVTFLLLPFSCCCCLLILFYLCCF 121
F +++ F + F CC C+ F + F C C ++++LCCF
Sbjct: 66 FFCDVIILFIFFFYFVLCFL---------YCCFYLVCLVFFCI-FCCVLCYFLIYFLCCF 115
Query: 120 CLYFLLFVVFLYVF 79
L +VVFL++F
Sbjct: 116 ----LFWVVFLFLF 125
>pir||S36954 cytochrome-c oxidase (EC 1.9.3.1) chain III - Herpetomonas
megaseliae mitochondrion gi|4185587|gb|AAD09164.1|
cytochrome oxidase subunit III [Herpetomonas megaseliae]
Length = 288
Score = 41.6 bits (96), Expect = 0.015
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Frame = -3
Query: 449 TNVFVLLA-PVGLAIY*CMDFVITLCGSTFCCYESCTSLALIKKTLLDLVCVCLFFLWSF 273
+ VFV L+ P + +Y +VI LCG CC+ S +D+ V FF F
Sbjct: 12 SGVFVFLSLPAVVIVY----YVICLCGFMICCFGSF--------VFVDMCFVFFFFGLLF 59
Query: 272 VFLLLLLPLFSLLVQPVFMKRVDVVVVVSRFCCYLFLAAAVC*SYFICAVFVCIFYSLLF 93
LLLL LF ++ +F + V+ F ++F + S+F IF F
Sbjct: 60 CILLLLCDLFVDFLRGIFDFCNFLRVLQYCFMWFVFSELVLFMSFFTVVFGYVIFLCCEF 119
Query: 92 SFMFSL 75
+F+F L
Sbjct: 120 AFVFCL 125
>pir||S51908 cryptogene protein G1(ND9) - Leishmania tarentolae (strain LEM125)
Length = 196
Score = 40.8 bits (94), Expect = 0.026
Identities = 29/91 (31%), Positives = 37/91 (39%), Gaps = 12/91 (13%)
Frame = -1
Query: 307 LYVFVCFFYGPLFFCYCCCLCLVCWCSRSS*KG*MLLLLCHVSAATFFLLLLFVDLILFV 128
L +F C F LFFC CC +C+ S + V FF++ LF +L F+
Sbjct: 11 LIMFRCVFVLLLFFCLCCRWVFLCFVDCS-----FVFFYLFVCFFLFFVMFLFFNLWFFL 65
Query: 127 L------------FLFVFFTLCCFPLCFLLC 71
L F FV F L C LLC
Sbjct: 66 LYCLDLFCIDFCGFCFVRFILIYVLFCLLLC 96
Score = 34.3 bits (77), Expect = 2.4
Identities = 32/137 (23%), Positives = 51/137 (36%), Gaps = 9/137 (6%)
Frame = -3
Query: 392 FVITLCGSTFCCYESCTSLALIKKTLLDLVCVCLFFLWSFVFLLLLLPLFSL-LVQPVFM 216
F C F C+ C+ + L V F + FLL L LF + F+
Sbjct: 23 FFCLCCRWVFLCFVDCSFVFFYLFVCFFLFFVMFLFFNLWFFLLYCLDLFCIDFCGFCFV 82
Query: 215 KRVDVVVVVSRFCCY--------LFLAAAVC*SYFICAVFVCIFYSLLFSFMFSLVLDSN 60
+ + + V+ C+ FL + S F C+ +CIF +F +F V N
Sbjct: 83 RFILIYVLFCLLLCFRVSFVLICFFLFFGLVFSLFFCSYALCIFEREVFD-LFGFVFCGN 141
Query: 59 LTWERLFPRFSFYPFMI 9
R + + F F +
Sbjct: 142 DCLHRFYVDWFFVGFFL 158
Score = 33.9 bits (76), Expect = 3.1
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 192 CVTFLLLPFSCCCCLLILFYLCCFCLYFLLFVVFLYVF 79
CV LLL F CC + L ++ C ++F LFV F F
Sbjct: 16 CVFVLLLFFCLCCRWVFLCFVDCSFVFFYLFVCFFLFF 53
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 676,417,445
Number of Sequences: 1393205
Number of extensions: 14501795
Number of successful extensions: 82927
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 48905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72319
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44594917920
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
