Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004384A_C01 KMC004384A_c01
(472 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_326419.1| unknown; predicted coding region [Mycoplasma pu... 29 0.41
ref|NP_704188.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.51
ref|NP_376004.1| 281aa long hypothetical protein [Sulfolobus tok... 33 1.1
gb|AAD52748.1|AF123690_1 NADH dehydrogenase [Proboscidea louisia... 33 1.5
ref|NP_498055.1| Putative endoplasmic reticulum membrane protein... 33 1.5
>ref|NP_326419.1| unknown; predicted coding region [Mycoplasma pulmonis]
gi|25392432|pir||D90585 hypothetical protein MYPU_5880
[imported] - Mycoplasma pulmonis (strain UAB CTIP)
gi|14090003|emb|CAC13761.1| unknown; predicted coding
region [Mycoplasma pulmonis]
Length = 316
Score = 29.3 bits (64), Expect(2) = 0.41
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -2
Query: 312 FDTFTLTFSYISSSFTFFFFYHIVSHFSLFLSLGEWNWGVNKNISNKDISF 160
F +F +S+ +F+F F++ +S F S + + +IS+ DISF
Sbjct: 69 FSSFCYFWSFFFCAFSFSCFFNFNHDYSPFPSCSSLAFSIKLSISSIDISF 119
Score = 24.6 bits (52), Expect(2) = 0.41
Identities = 10/26 (38%), Positives = 17/26 (64%)
Frame = -1
Query: 436 SYFSLFYFYLFLFYNTS*LSLFSPLF 359
++F++++FY F F+N S FS F
Sbjct: 13 NFFNIYFFYFFSFFNIDFFS-FSTCF 37
>ref|NP_704188.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498926|emb|CAD51004.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 418
Score = 34.7 bits (78), Expect = 0.51
Identities = 41/157 (26%), Positives = 58/157 (36%), Gaps = 9/157 (5%)
Frame = -1
Query: 469 FSSFSITPHHISYFSLFYFYLFLF---------YNTS*LSLFSPLFLSLCKCQGGMDVTK 317
F SF+ H IS+F + + Y F+ + TS LF L LS +T
Sbjct: 192 FHSFTFIIHFISFFYVHHSYYFILLRLSFILFHFFTSSFILFHSLTLSFILFH---SLTL 248
Query: 316 GF*YIHTHFLLYLIFIHFLLFLSHCFSFLSIPISR*VELGC*QKYFQQRYFLSLFYLFPN 137
F H+ L +++F H F+ H SF YF LFY
Sbjct: 249 SFILFHSLTLSFILF-HSFTFIIHIISFF--------------------YFYRLFYFISL 287
Query: 136 LPTGSHAHEVLFCRKGCFRSSSFVSSPCDHVYI*HNL 26
LP S +L F S +F+ Y+ H+L
Sbjct: 288 LPR-SFYFILLRSSFILFHSFTFIIHIISFFYVCHSL 323
>ref|NP_376004.1| 281aa long hypothetical protein [Sulfolobus tokodaii]
gi|15621117|dbj|BAB65113.1| 281aa long hypothetical
protein [Sulfolobus tokodaii]
Length = 281
Score = 33.5 bits (75), Expect = 1.1
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Frame = -3
Query: 437 LLLFSLLFLSLSFL*HIITLTLLSSISISL*MSRWNGCDQRVLIHSHSLSLIS-HLHSLS 261
+LLF+ + +S+ L +TLTL S++ +W ++R L LIS +HSLS
Sbjct: 85 MLLFNGILVSIYSLYVGVTLTLAGIYSLN----KWK-LEKRFL-----KPLISGFMHSLS 134
Query: 260 SFSITLFLISLYSYL*VSGIGVLTKIFPTKIFPFSFLLVSQPPHRFTCSRSVV 102
+++ FL+ Y +G+ L I T +FP ++S P + ++S +
Sbjct: 135 RYAVVEFLVLSY-----TGLNPLLAITLTILFPLPMAIISAPLGKIIGNKSKI 182
>gb|AAD52748.1|AF123690_1 NADH dehydrogenase [Proboscidea louisianica]
Length = 703
Score = 33.1 bits (74), Expect = 1.5
Identities = 25/107 (23%), Positives = 45/107 (41%), Gaps = 1/107 (0%)
Frame = -2
Query: 471 LSLPFLSHLIISLTFLSSISISFFSITHHNSHSSLLYFYLFVNVKVEWM*PKGFDTFTLT 292
L +PF+ L LS + ++ H NS S Y+ F + F+++
Sbjct: 558 LGIPFIQQGANHLDILSKWLAPYINVLHQNSKDSTDYYEFFTDA-----------IFSVS 606
Query: 291 FSYISSSFTFFFFYHIVSHFSLFLSLGEW-NWGVNKNISNKDISFLF 154
SY F+F + I S F F + + G N++ +K ++ L+
Sbjct: 607 ISYFGIFFSFLLYNPIYSSFKNFDLINSFVKKGPNRSRWDKILNVLY 653
>ref|NP_498055.1| Putative endoplasmic reticulum membrane protein, with a
transmembrane domain, nematode specific [Caenorhabditis
elegans] gi|7496616|pir||T15663 hypothetical protein
C27F2.6 - Caenorhabditis elegans
gi|1065509|gb|AAA81426.1| Hypothetical protein C27F2.6
[Caenorhabditis elegans]
Length = 165
Score = 33.1 bits (74), Expect = 1.5
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 15/126 (11%)
Frame = -2
Query: 468 SLPFLSHLIISLTFLSSISISFFSITHHNSHSSLLYFYL---------FVNVKVEWM*PK 316
+L FLS L++ L S S F SI + + SS + ++ V + W
Sbjct: 19 NLIFLSSLLLCSISLLSSSALFSSIENISYQSSAYFGFMTIFGISFGDIVPTNLVWF--S 76
Query: 315 GFDTFTLTFSYISSSFTFFF------FYHIVSHFSLFLSLGEWNWGVNKNISNKDISFLF 154
G+ F L +S+ +FF F+HI++ L L + + + +S + I +
Sbjct: 77 GYCLFFLISDVLSNHIFYFFQARVRYFFHILARKILLLREEDDGFQLETTVSLQHIPIIN 136
Query: 153 STCFPT 136
S C P+
Sbjct: 137 SQCMPS 142
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,615,957
Number of Sequences: 1393205
Number of extensions: 8538766
Number of successful extensions: 39300
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 37495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39180
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
