Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004383A_C01 KMC004383A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190880.1| putative protein; protein id: At3g53120.1 [Arab... 71 1e-11
ref|NP_704079.1| hypothetical protein [Plasmodium falciparum 3D7... 34 1.5
ref|XP_219580.1| similar to hypothetical protein FLJ12750 [Homo ... 33 2.0
gb|AAH25865.1| similar to hypothetical protein FLJ12750 [Mus mus... 33 2.0
ref|NP_721859.1| putative ribonuclease III [Streptococcus mutans... 33 3.4
>ref|NP_190880.1| putative protein; protein id: At3g53120.1 [Arabidopsis thaliana]
gi|11358357|pir||T46158 hypothetical protein T4D2.50 -
Arabidopsis thaliana gi|6630732|emb|CAB64215.1| putative
protein [Arabidopsis thaliana]
Length = 217
Score = 70.9 bits (172), Expect = 1e-11
Identities = 34/47 (72%), Positives = 38/47 (80%)
Frame = -3
Query: 583 DEESENLHQNLLDGEIDLGAFLQKYKKLRTTYHRKTLIHLAAKTSTI 443
DEESE L + L+ EID AF+QKYKKLRTTYHR+ LIHLAAKTS I
Sbjct: 171 DEESEALQEKFLEKEIDTAAFVQKYKKLRTTYHRRALIHLAAKTSNI 217
>ref|NP_704079.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498817|emb|CAD50894.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1321
Score = 33.9 bits (76), Expect = 1.5
Identities = 22/74 (29%), Positives = 35/74 (46%)
Frame = +3
Query: 69 KKVHINGDNYL*IQVNEKGRIYEYKSPSEQSHFMNTEYPNENRCIMNTSHQSLVNNLNSK 248
KK H N Q NEK + E K +E+ F ++PNE + + NN ++K
Sbjct: 399 KKKHHNEKK----QYNEKKQYNEKKQFNEKKKFNEKKHPNEKKHLNEKFDSPKFNNTSNK 454
Query: 249 AVQINVSHLIIDSS 290
A+ + +L ID +
Sbjct: 455 AIGKSTHYLKIDKN 468
>ref|XP_219580.1| similar to hypothetical protein FLJ12750 [Homo sapiens] [Rattus
norvegicus] gi|27730255|ref|XP_217901.1| similar to
hypothetical protein FLJ12750 [Homo sapiens] [Rattus
norvegicus]
Length = 353
Score = 33.5 bits (75), Expect = 2.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 583 DEESENLHQNLLDGEIDLGAFLQKYKKLRTTYH 485
+EESE + + L+GE+ L FL+ + +RT H
Sbjct: 112 EEESEAMAEKFLEGEVPLETFLESFSSMRTLLH 144
>gb|AAH25865.1| similar to hypothetical protein FLJ12750 [Mus musculus]
Length = 352
Score = 33.5 bits (75), Expect = 2.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 583 DEESENLHQNLLDGEIDLGAFLQKYKKLRTTYH 485
+EESE + + L+GE+ L FL+ + +RT H
Sbjct: 112 EEESEAMAEKFLEGEVPLETFLESFSSMRTLLH 144
>ref|NP_721859.1| putative ribonuclease III [Streptococcus mutans UA159]
gi|24377882|gb|AAN59165.1|AE014983_6 putative
ribonuclease III [Streptococcus mutans UA159]
Length = 231
Score = 32.7 bits (73), Expect = 3.4
Identities = 14/43 (32%), Positives = 25/43 (57%)
Frame = +3
Query: 156 QSHFMNTEYPNENRCIMNTSHQSLVNNLNSKAVQINVSHLIID 284
++ F +T Y NE+R ++N SH + L +Q+ +SH + D
Sbjct: 23 ETAFTHTSYANEHR-LLNISHNERLEFLGDAVLQLTISHYLFD 64
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,465,283
Number of Sequences: 1393205
Number of extensions: 9979727
Number of successful extensions: 23092
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 22250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23069
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
