Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004382A_C01 KMC004382A_c01
(482 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA21804.1| hypothetical protein [Plasmodium yoelii yoelii] 35 0.56
ref|NP_116843.1| MS155, putative mobilization protein [Microscil... 33 1.6
ref|NP_566169.1| expressed protein; protein id: At3g02290.1, sup... 33 2.1
ref|XP_154680.1| hypothetical protein XP_154680 [Mus musculus] 31 6.2
ref|NP_702125.1| hypothetical protein [Plasmodium falciparum 3D7... 31 6.2
>gb|EAA21804.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1489
Score = 34.7 bits (78), Expect = 0.56
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +2
Query: 5 NTTLNLIYYHKTQFHNHFQLISWSVSVSPHLILTTNENKKIKHDLELREKQNAE 166
N+T + I +H HN FQ +SPH I+ N N + H+L L+ ++A+
Sbjct: 320 NSTNSSIAHHNATPHNIFQ------KLSPHNIIIDNNNSNVLHNLNLKNVRDAK 367
>ref|NP_116843.1| MS155, putative mobilization protein [Microscilla sp. PRE1]
gi|14484995|gb|AAK62877.1| MS155, putative mobilization
protein [Microscilla sp. PRE1]
Length = 470
Score = 33.1 bits (74), Expect = 1.6
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Frame = +2
Query: 2 FNTTLNLIYYHKTQFHNHFQLISWSVSVSPHLILTTNENKKI---------KHDLELREK 154
++ TL+ Y H + H+H+ +++ + + +I ++ K K+ LE+ +
Sbjct: 99 YDKTLHAAYRHSDKEHDHWHIVATAADIEGRVIECRDDFHKSARITRQLEKKYGLEVLNE 158
Query: 155 QNAEKLGAKQLDH 193
Q A+ + KQL H
Sbjct: 159 QGAKSISEKQLKH 171
>ref|NP_566169.1| expressed protein; protein id: At3g02290.1, supported by cDNA:
156940. [Arabidopsis thaliana]
gi|21553680|gb|AAM62773.1| unknown [Arabidopsis
thaliana]
Length = 231
Score = 32.7 bits (73), Expect = 2.1
Identities = 20/45 (44%), Positives = 22/45 (48%)
Frame = -3
Query: 270 CVSLCFDVVSGSEHMLPVSCVYLN*R*SNCLAPNFSAFCFSLSSR 136
CVS CF V E+M P S VY N CLA NF S+ R
Sbjct: 3 CVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRR 47
>ref|XP_154680.1| hypothetical protein XP_154680 [Mus musculus]
Length = 376
Score = 31.2 bits (69), Expect = 6.2
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +2
Query: 14 LNLIYYHKTQFHNHFQLISWSVSVSPHLILTT-NENKKIKHDLELREKQNAEKLGA 178
L ++ ++ + HNH ++ + +SP L LT E+ ++DL E++N EKL A
Sbjct: 219 LEILSAYEGKVHNHSRIYHEEI-LSPLLALTACRESSSCRYDLAAAEEKNREKLAA 273
>ref|NP_702125.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497303|gb|AAN36849.1|AE014819_60 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1781
Score = 31.2 bits (69), Expect = 6.2
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +2
Query: 17 NLIYYHKTQFHNHFQLISWSVSVSPHLILTTNE---NKKIKHDLELREKQNAEK 169
NL++ + Q +NH W+V + +IL NE N K K++ ++ ++QN K
Sbjct: 956 NLLFTYNEQMNNHHNNKKWNV-FNNSIILEKNEKITNSKKKNNYKIHQRQNINK 1008
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 383,934,123
Number of Sequences: 1393205
Number of extensions: 7252772
Number of successful extensions: 17190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17186
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
