Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004378A_C01 KMC004378A_c01
(452 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563938.1| putative mandelonitrile lyase; protein id: At1g... 81 6e-15
dbj|BAC42615.1| putative mandelonitrile lyase [Arabidopsis thali... 81 6e-15
pir||D86275 F7A19.26 protein - Arabidopsis thaliana gi|5080793|g... 81 6e-15
gb|AAK98676.1|AC021893_10 Unknown protein [Oryza sativa] 50 1e-05
ref|ZP_00120585.1| hypothetical protein [Bifidobacterium longum ... 30 8.6
>ref|NP_563938.1| putative mandelonitrile lyase; protein id: At1g14180.1 [Arabidopsis
thaliana]
Length = 270
Score = 80.9 bits (198), Expect = 6e-15
Identities = 35/69 (50%), Positives = 52/69 (74%), Gaps = 1/69 (1%)
Frame = -2
Query: 451 KPFCEDGPS-RSWGCSQAGDCVAGALHAQPRNAMFLLNRNRIKRNLSSKGNLSKEFPGKI 275
KP EDGPS R WGC+QAGDCV A++ P+N M ++NRNRI+++LS +GN SK+F K+
Sbjct: 183 KPLYEDGPSSRPWGCAQAGDCVESAVNVPPKNTMMMINRNRIRKSLSLRGNSSKDFSRKM 242
Query: 274 RKSGAYSSQ 248
++S + + +
Sbjct: 243 KRSNSVAME 251
>dbj|BAC42615.1| putative mandelonitrile lyase [Arabidopsis thaliana]
Length = 348
Score = 80.9 bits (198), Expect = 6e-15
Identities = 35/69 (50%), Positives = 52/69 (74%), Gaps = 1/69 (1%)
Frame = -2
Query: 451 KPFCEDGPS-RSWGCSQAGDCVAGALHAQPRNAMFLLNRNRIKRNLSSKGNLSKEFPGKI 275
KP EDGPS R WGC+QAGDCV A++ P+N M ++NRNRI+++LS +GN SK+F K+
Sbjct: 261 KPLYEDGPSSRPWGCAQAGDCVESAVNVPPKNTMMMINRNRIRKSLSLRGNSSKDFSRKM 320
Query: 274 RKSGAYSSQ 248
++S + + +
Sbjct: 321 KRSNSVAME 329
>pir||D86275 F7A19.26 protein - Arabidopsis thaliana
gi|5080793|gb|AAD39303.1|AC007576_26 Hypothetical
protein [Arabidopsis thaliana]
Length = 244
Score = 80.9 bits (198), Expect = 6e-15
Identities = 35/69 (50%), Positives = 52/69 (74%), Gaps = 1/69 (1%)
Frame = -2
Query: 451 KPFCEDGPS-RSWGCSQAGDCVAGALHAQPRNAMFLLNRNRIKRNLSSKGNLSKEFPGKI 275
KP EDGPS R WGC+QAGDCV A++ P+N M ++NRNRI+++LS +GN SK+F K+
Sbjct: 157 KPLYEDGPSSRPWGCAQAGDCVESAVNVPPKNTMMMINRNRIRKSLSLRGNSSKDFSRKM 216
Query: 274 RKSGAYSSQ 248
++S + + +
Sbjct: 217 KRSNSVAME 225
>gb|AAK98676.1|AC021893_10 Unknown protein [Oryza sativa]
Length = 498
Score = 50.1 bits (118), Expect = 1e-05
Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = -2
Query: 436 DGPSRSWGCSQAGDCVAGALHAQPRNAMFLLNRNRIKR-NLSSKGNLSKEF 287
+GPSR W C+QAGDCVAGA+ +++ LL+R+ KR + +SKG K++
Sbjct: 436 EGPSRVWSCAQAGDCVAGAVQIPRASSISLLSRSGHKRHHAASKGESGKDW 486
>ref|ZP_00120585.1| hypothetical protein [Bifidobacterium longum DJO10A]
Length = 407
Score = 30.4 bits (67), Expect = 8.6
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -2
Query: 394 CVAGALHAQPRNAM-FLLNRNRIKRNLSSKGNLSKEFPGKIRKSGAYSSQLFS-GSSADQ 221
C AG H QPRNAM FL N + I+ + NL++ G ++ S S F+ GS D
Sbjct: 297 CHAGNAHGQPRNAMEFLDNASAIEPDREDNPNLAE---GTLKHSPDASFYFFTVGSLKDI 353
Query: 220 E 218
E
Sbjct: 354 E 354
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 391,923,370
Number of Sequences: 1393205
Number of extensions: 7885380
Number of successful extensions: 19714
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19705
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
