Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004377A_C01 KMC004377A_c01
(427 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172893.1| DNA-binding protein p24, putative; protein id: ... 94 3e-19
pdb|1L3A|D Chain D, Structure Of The Plant Transcriptional Regul... 90 6e-18
pdb|1L3A|C Chain C, Structure Of The Plant Transcriptional Regul... 90 6e-18
pdb|1L3A|B Chain B, Structure Of The Plant Transcriptional Regul... 90 6e-18
gb|AAF91282.1|AF233342_1 DNA-binding protein p24 [Solanum tubero... 90 6e-18
>ref|NP_172893.1| DNA-binding protein p24, putative; protein id: At1g14410.1,
supported by cDNA: gi_12083311, supported by cDNA:
gi_13877786, supported by cDNA: gi_16323417 [Arabidopsis
thaliana] gi|25518621|pir||F86278 hypothetical protein
F14L17.18 - Arabidopsis thaliana
gi|7262683|gb|AAF43941.1|AC012188_18 Contains similarity
to a hypothetical protein from Arabidopsis thaliana
gb|AC002521.2. EST gb|AI995686 comes from this gene
gi|12083312|gb|AAG48815.1|AF332452_1 putative
DNA-binding protein p24 [Arabidopsis thaliana]
gi|13877787|gb|AAK43971.1|AF370156_1 putative
DNA-binding protein p24 [Arabidopsis thaliana]
gi|16323418|gb|AAL15203.1| putative DNA-binding protein
p24 [Arabidopsis thaliana]
Length = 263
Score = 94.4 bits (233), Expect = 3e-19
Identities = 46/95 (48%), Positives = 62/95 (64%)
Frame = -1
Query: 418 KVMKVKSGKS*SWNLFQMVLVTSLTSVFKTRL*TLMKTSISPVTKAELAVLSSIFNFIMP 239
KV+KV+ S + F + + L +V ++ P+T+AE AVL S FNF++P
Sbjct: 177 KVLKVEPLPDGSGHFFNLSVQNKLVNVDES--------IYIPITRAEFAVLISAFNFVLP 228
Query: 238 YLLGWHTFANSVNPEYSSGVNNANPRYGGDYEWNR 134
YL+GWH FANS+ PE +S VNNA+P YGGDYEWNR
Sbjct: 229 YLIGWHAFANSIKPEETSRVNNASPNYGGDYEWNR 263
Score = 89.7 bits (221), Expect = 7e-18
Identities = 42/59 (71%), Positives = 49/59 (82%)
Frame = -3
Query: 425 KGKSDEGKVRKVLKLEPLPDGSGHFFNLSVQNKIVNIDENIYIPCYKSRVSSFELNFQF 249
KGKSDEGKVRKVLK+EPLPDGSGHFFNLSVQNK+VN+DE+IYIP ++ + F F
Sbjct: 167 KGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPITRAEFAVLISAFNF 225
>pdb|1L3A|D Chain D, Structure Of The Plant Transcriptional Regulator Pbf-2
Length = 171
Score = 90.1 bits (222), Expect = 6e-18
Identities = 41/59 (69%), Positives = 49/59 (82%)
Frame = -3
Query: 425 KGKSDEGKVRKVLKLEPLPDGSGHFFNLSVQNKIVNIDENIYIPCYKSRVSSFELNFQF 249
KG+SDEG+VRKVLK+EPLPDGSGHFFNLSVQNK++N+DENIYIP K+ + F F
Sbjct: 90 KGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNF 148
Score = 59.3 bits (142), Expect = 1e-08
Identities = 34/75 (45%), Positives = 43/75 (57%)
Frame = -1
Query: 418 KVMKVKSGKS*SWNLFQMVLVTSLTSVFKTRL*TLMKTSISPVTKAELAVLSSIFNFIMP 239
KV+KV+ S + F + + + +L L + PVTKAE AVL S FNF+MP
Sbjct: 100 KVLKVEPLPDGSGHFFNLSV--------QNKLINLDENIYIPVTKAEFAVLVSAFNFVMP 151
Query: 238 YLLGWHTFANSVNPE 194
YLLGWHT NS PE
Sbjct: 152 YLLGWHTAVNSFKPE 166
>pdb|1L3A|C Chain C, Structure Of The Plant Transcriptional Regulator Pbf-2
Length = 182
Score = 90.1 bits (222), Expect = 6e-18
Identities = 41/59 (69%), Positives = 49/59 (82%)
Frame = -3
Query: 425 KGKSDEGKVRKVLKLEPLPDGSGHFFNLSVQNKIVNIDENIYIPCYKSRVSSFELNFQF 249
KG+SDEG+VRKVLK+EPLPDGSGHFFNLSVQNK++N+DENIYIP K+ + F F
Sbjct: 90 KGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNF 148
Score = 61.2 bits (147), Expect = 3e-09
Identities = 38/94 (40%), Positives = 48/94 (50%)
Frame = -1
Query: 418 KVMKVKSGKS*SWNLFQMVLVTSLTSVFKTRL*TLMKTSISPVTKAELAVLSSIFNFIMP 239
KV+KV+ S + F + + + +L L + PVTKAE AVL S FNF+MP
Sbjct: 100 KVLKVEPLPDGSGHFFNLSV--------QNKLINLDENIYIPVTKAEFAVLVSAFNFVMP 151
Query: 238 YLLGWHTFANSVNPEYSSGVNNANPRYGGDYEWN 137
YLLGWHT NS PE G + EWN
Sbjct: 152 YLLGWHTAVNSFKPE-----------SGAELEWN 174
>pdb|1L3A|B Chain B, Structure Of The Plant Transcriptional Regulator Pbf-2
Length = 170
Score = 90.1 bits (222), Expect = 6e-18
Identities = 41/59 (69%), Positives = 49/59 (82%)
Frame = -3
Query: 425 KGKSDEGKVRKVLKLEPLPDGSGHFFNLSVQNKIVNIDENIYIPCYKSRVSSFELNFQF 249
KG+SDEG+VRKVLK+EPLPDGSGHFFNLSVQNK++N+DENIYIP K+ + F F
Sbjct: 90 KGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNF 148
Score = 59.3 bits (142), Expect = 1e-08
Identities = 34/75 (45%), Positives = 43/75 (57%)
Frame = -1
Query: 418 KVMKVKSGKS*SWNLFQMVLVTSLTSVFKTRL*TLMKTSISPVTKAELAVLSSIFNFIMP 239
KV+KV+ S + F + + + +L L + PVTKAE AVL S FNF+MP
Sbjct: 100 KVLKVEPLPDGSGHFFNLSV--------QNKLINLDENIYIPVTKAEFAVLVSAFNFVMP 151
Query: 238 YLLGWHTFANSVNPE 194
YLLGWHT NS PE
Sbjct: 152 YLLGWHTAVNSFKPE 166
>gb|AAF91282.1|AF233342_1 DNA-binding protein p24 [Solanum tuberosum]
Length = 274
Score = 90.1 bits (222), Expect = 6e-18
Identities = 41/59 (69%), Positives = 49/59 (82%)
Frame = -3
Query: 425 KGKSDEGKVRKVLKLEPLPDGSGHFFNLSVQNKIVNIDENIYIPCYKSRVSSFELNFQF 249
KG+SDEG+VRKVLK+EPLPDGSGHFFNLSVQNK++N+DENIYIP K+ + F F
Sbjct: 178 KGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNF 236
Score = 84.0 bits (206), Expect = 4e-16
Identities = 46/95 (48%), Positives = 57/95 (59%)
Frame = -1
Query: 418 KVMKVKSGKS*SWNLFQMVLVTSLTSVFKTRL*TLMKTSISPVTKAELAVLSSIFNFIMP 239
KV+KV+ S + F + + + +L L + PVTKAE AVL S FNF+MP
Sbjct: 188 KVLKVEPLPDGSGHFFNLSV--------QNKLINLDENIYIPVTKAEFAVLVSAFNFVMP 239
Query: 238 YLLGWHTFANSVNPEYSSGVNNANPRYGGDYEWNR 134
YLLGWHT NS PE +S NNANPR G + EWNR
Sbjct: 240 YLLGWHTAVNSFKPEDASRSNNANPRSGAELEWNR 274
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 361,173,934
Number of Sequences: 1393205
Number of extensions: 7663282
Number of successful extensions: 19940
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 19248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19927
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 6856422288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
