Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004374A_C01 KMC004374A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL06483.1|AF411793_1 At2g20670/F23N11.1 [Arabidopsis thalian... 109 2e-23
ref|NP_565481.1| expressed protein; protein id: At2g20670.1, sup... 109 2e-23
ref|NP_194974.1| putative protein; protein id: At4g32480.1, supp... 107 1e-22
dbj|BAB56021.1| P0481E12.6 [Oryza sativa (japonica cultivar-group)] 92 4e-18
dbj|BAC06216.1| P0018C10.17 [Oryza sativa (japonica cultivar-gro... 69 3e-11
>gb|AAL06483.1|AF411793_1 At2g20670/F23N11.1 [Arabidopsis thaliana]
gi|20147393|gb|AAM10406.1| At2g20670/F23N11.1
[Arabidopsis thaliana]
Length = 294
Score = 109 bits (273), Expect = 2e-23
Identities = 53/99 (53%), Positives = 70/99 (70%), Gaps = 2/99 (2%)
Frame = -1
Query: 575 ELARASEGYNRLVWRLPEVYVGKVERLSNVIKILCMAAKRCTKENKMHMGPWRKLRYMEA 396
E+A+ SE Y RL+ RLPEVYVGK ERL ++IKILC+A K+C ++ KMHM PWRK +YM+A
Sbjct: 180 EIAKGSEEYKRLISRLPEVYVGKTERLRSLIKILCIAGKKCLRDKKMHMAPWRKHKYMQA 239
Query: 395 KWLGPCKRNIS-TTSLSMGYSDQG-MPKQKPKASLLTVD 285
KWLG C R+ S S+S + +P KP+ S+L D
Sbjct: 240 KWLGTCDRSSSLEASVSEAMEPENWVPVAKPRVSMLNYD 278
>ref|NP_565481.1| expressed protein; protein id: At2g20670.1, supported by cDNA:
34827., supported by cDNA: gi_15724181, supported by
cDNA: gi_20147392 [Arabidopsis thaliana]
gi|25411987|pir||H84591 hypothetical protein At2g20670
[imported] - Arabidopsis thaliana
gi|4512647|gb|AAD21702.1| expressed protein [Arabidopsis
thaliana] gi|20197684|gb|AAM15201.1| expressed protein
[Arabidopsis thaliana] gi|21592987|gb|AAM64936.1|
unknown [Arabidopsis thaliana]
Length = 294
Score = 109 bits (273), Expect = 2e-23
Identities = 53/99 (53%), Positives = 70/99 (70%), Gaps = 2/99 (2%)
Frame = -1
Query: 575 ELARASEGYNRLVWRLPEVYVGKVERLSNVIKILCMAAKRCTKENKMHMGPWRKLRYMEA 396
E+A+ SE Y RL+ RLPEVYVGK ERL ++IKILC+A K+C ++ KMHM PWRK +YM+A
Sbjct: 180 EIAKGSEEYKRLISRLPEVYVGKTERLRSLIKILCIAGKKCLRDKKMHMAPWRKHKYMQA 239
Query: 395 KWLGPCKRNIS-TTSLSMGYSDQG-MPKQKPKASLLTVD 285
KWLG C R+ S S+S + +P KP+ S+L D
Sbjct: 240 KWLGTCDRSSSLEASVSEAMEPENWVPVAKPRVSMLNYD 278
>ref|NP_194974.1| putative protein; protein id: At4g32480.1, supported by cDNA:
gi_15450372, supported by cDNA: gi_16974484 [Arabidopsis
thaliana] gi|7486633|pir||T05358 hypothetical protein
F8B4.180 - Arabidopsis thaliana
gi|4049350|emb|CAA22575.1| putative protein [Arabidopsis
thaliana] gi|7270152|emb|CAB79965.1| putative protein
[Arabidopsis thaliana] gi|15450373|gb|AAK96480.1|
AT4g32480/F8B4_180 [Arabidopsis thaliana]
gi|16974485|gb|AAL31246.1| AT4g32480/F8B4_180
[Arabidopsis thaliana]
Length = 287
Score = 107 bits (266), Expect = 1e-22
Identities = 53/99 (53%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Frame = -1
Query: 575 ELARASEGYNRLVWRLPEVYVGKVERLSNVIKILCMAAKRCTKENKMHMGPWRKLRYMEA 396
E+AR SE Y RL+ LPEVYVGK ERL ++IKILC AAK+C K+ KMHMGPWRK +YM+A
Sbjct: 178 EMARGSEEYKRLIGMLPEVYVGKTERLKSLIKILCTAAKKCMKDKKMHMGPWRKHKYMQA 237
Query: 395 KWLGPCKR-NISTTSLSMGYSDQGMPKQKPKASLLTVDL 282
KW G C+R ++S S + + P K + S+L L
Sbjct: 238 KWFGTCERKSVSPVSET---EENMFPVAKQRVSMLNYGL 273
>dbj|BAB56021.1| P0481E12.6 [Oryza sativa (japonica cultivar-group)]
Length = 267
Score = 92.4 bits (228), Expect = 4e-18
Identities = 47/98 (47%), Positives = 67/98 (67%), Gaps = 1/98 (1%)
Frame = -1
Query: 575 ELARASEGYNRLVWRLPEVYVGKVERLSNVIKILCMAAKRCTKENKMHMGPWRKLRYMEA 396
E+ARAS Y LV LPEV+VG+ +RL V+K +C AAK+C KEN MHMGPWRK +YM++
Sbjct: 163 EVARASAEYRALVTALPEVFVGRADRLRAVVKAMCAAAKQCMKENNMHMGPWRKHKYMQS 222
Query: 395 KWLGPCKRNISTTSLSMG-YSDQGMPKQKPKASLLTVD 285
KWLG +R + + + +S + + K +AS+L+ D
Sbjct: 223 KWLGTPERVAAAAAAPVAVWSPE--KQTKFRASMLSFD 258
>dbj|BAC06216.1| P0018C10.17 [Oryza sativa (japonica cultivar-group)]
gi|22202683|dbj|BAC07341.1| P0471B04.25 [Oryza sativa
(japonica cultivar-group)]
Length = 263
Score = 69.3 bits (168), Expect = 3e-11
Identities = 34/78 (43%), Positives = 51/78 (64%)
Frame = -1
Query: 575 ELARASEGYNRLVWRLPEVYVGKVERLSNVIKILCMAAKRCTKENKMHMGPWRKLRYMEA 396
+LAR + Y L RLP V+VG E+L + +LCMAA+R +E+ +H+ PWR+ Y++A
Sbjct: 88 QLARPAPWYAHLSSRLPPVFVGPPEKLRQAVALLCMAAQRSLRESGLHVPPWRRPSYVQA 147
Query: 395 KWLGPCKRNISTTSLSMG 342
KWL PC R + ++L G
Sbjct: 148 KWL-PC-RGVQASALPPG 163
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,172,745
Number of Sequences: 1393205
Number of extensions: 11706189
Number of successful extensions: 29184
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 28404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29177
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
