Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004372A_C01 KMC004372A_c01
(520 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL83725.1|AF328842_1 homeodomain protein HB2 [Picea abies] 33 1.5
ref|XP_137954.1| similar to tudor protein [Xenopus laevis] [Mus ... 33 2.6
ref|XP_128806.4| expressed sequence AW494914 [Mus musculus] gi|2... 32 3.4
>gb|AAL83725.1|AF328842_1 homeodomain protein HB2 [Picea abies]
Length = 708
Score = 33.5 bits (75), Expect = 1.5
Identities = 19/48 (39%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
Frame = -1
Query: 334 RISKLALSVFGLPLPSIVRYEFPLKVLLSIG-GGTPNRLDKGCWQLLH 194
R+ LA FG P+PS+ K L +G GG P L GC L+H
Sbjct: 148 RLCALAGKFFGRPVPSMPSVPLMPKSSLDLGVGGMPTSLPSGCADLMH 195
>ref|XP_137954.1| similar to tudor protein [Xenopus laevis] [Mus musculus]
Length = 2108
Score = 32.7 bits (73), Expect = 2.6
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Frame = -2
Query: 519 CLGAKKGTLRAVLVSVSS-RDNTYSL-FGST----YFSSESILATSNYSQKLLSRTDSDF 358
C A+ G RA++ V+ + N Y L +GST +F + +L +++++ D+ +
Sbjct: 613 CYTARIGFYRAIVTDVNDYQTNVYLLDYGSTDSIPFFDVKILLPEFPILLQVIAKRDNKY 672
Query: 357 RINYSNVEEFPNSHLVSL 304
+N NVE N+ VSL
Sbjct: 673 MVNIQNVEAPENTDAVSL 690
>ref|XP_128806.4| expressed sequence AW494914 [Mus musculus]
gi|26343589|dbj|BAC35451.1| unnamed protein product [Mus
musculus]
Length = 1025
Score = 32.3 bits (72), Expect = 3.4
Identities = 17/41 (41%), Positives = 23/41 (55%)
Frame = +1
Query: 4 SKVTLLNDAKHLKKLXGVSQDKYSCKPVNVLLIVSSIHVSK 126
S +TLL + + KL +Q KYS PVNV + S +SK
Sbjct: 410 SLITLLEEESEIVKLLTHTQHKYSVPPVNVPPVPSETRISK 450
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,765,968
Number of Sequences: 1393205
Number of extensions: 7808312
Number of successful extensions: 17067
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17064
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
