Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004368A_C01 KMC004368A_c01
(612 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564985.1| expressed protein; protein id: At1g70160.1, sup... 214 9e-55
pir||D96724 hypothetical protein F20P5.12 [imported] - Arabidops... 214 9e-55
ref|NP_194432.1| putative protein; protein id: At4g27020.1, supp... 206 2e-52
ref|NP_200298.1| putative protein; protein id: At5g54870.1, supp... 197 7e-50
dbj|BAC55742.1| P0456B03.4 [Oryza sativa (japonica cultivar-group)] 193 1e-48
>ref|NP_564985.1| expressed protein; protein id: At1g70160.1, supported by cDNA:
gi_13430575, supported by cDNA: gi_15293160 [Arabidopsis
thaliana] gi|13430576|gb|AAK25910.1|AF360200_1 unknown
protein [Arabidopsis thaliana]
gi|15293161|gb|AAK93691.1| unknown protein [Arabidopsis
thaliana]
Length = 523
Score = 214 bits (544), Expect = 9e-55
Identities = 96/120 (80%), Positives = 106/120 (88%)
Frame = -1
Query: 612 FDELLTIPEQDEWVYSDGKSTTCVAFILSMYKEAGIFGPISSSIQVTEFTIRDAYMLRIF 433
FDELLTIPEQDEWVYSDGKSTTCVAFIL+MYK AGIF P++ IQVTEFTIRDAY L++F
Sbjct: 404 FDELLTIPEQDEWVYSDGKSTTCVAFILAMYKAAGIFDPLADHIQVTEFTIRDAYTLKLF 463
Query: 432 EDNQTRLPRWCNNENDGLPFCQILGEYRMELPGYNTLDPYPNMNEHCPSLPPTYDRPSQC 253
E NQTRLP WCN E L FCQILGEYRMELPGYNT+ PYPNMN++CPSLPP Y+RPS+C
Sbjct: 464 ESNQTRLPSWCNTEEGKLDFCQILGEYRMELPGYNTIYPYPNMNQNCPSLPPNYERPSKC 523
>pir||D96724 hypothetical protein F20P5.12 [imported] - Arabidopsis thaliana
gi|2194125|gb|AAB61100.1| ESTs gb|R30459,gb|N38441 come
from this gene. [Arabidopsis thaliana]
Length = 551
Score = 214 bits (544), Expect = 9e-55
Identities = 96/120 (80%), Positives = 106/120 (88%)
Frame = -1
Query: 612 FDELLTIPEQDEWVYSDGKSTTCVAFILSMYKEAGIFGPISSSIQVTEFTIRDAYMLRIF 433
FDELLTIPEQDEWVYSDGKSTTCVAFIL+MYK AGIF P++ IQVTEFTIRDAY L++F
Sbjct: 432 FDELLTIPEQDEWVYSDGKSTTCVAFILAMYKAAGIFDPLADHIQVTEFTIRDAYTLKLF 491
Query: 432 EDNQTRLPRWCNNENDGLPFCQILGEYRMELPGYNTLDPYPNMNEHCPSLPPTYDRPSQC 253
E NQTRLP WCN E L FCQILGEYRMELPGYNT+ PYPNMN++CPSLPP Y+RPS+C
Sbjct: 492 ESNQTRLPSWCNTEEGKLDFCQILGEYRMELPGYNTIYPYPNMNQNCPSLPPNYERPSKC 551
>ref|NP_194432.1| putative protein; protein id: At4g27020.1, supported by cDNA:
gi_15982906, supported by cDNA: gi_18650638 [Arabidopsis
thaliana] gi|7452424|pir||T04825 hypothetical protein
F10M23.360 - Arabidopsis thaliana
gi|4455225|emb|CAB36548.1| putative protein [Arabidopsis
thaliana] gi|7269555|emb|CAB79557.1| putative protein
[Arabidopsis thaliana] gi|18650639|gb|AAL75889.1|
AT4g27020/F10M23_360 [Arabidopsis thaliana]
gi|23505979|gb|AAN28849.1| At4g27020/F10M23_360
[Arabidopsis thaliana]
Length = 523
Score = 206 bits (524), Expect = 2e-52
Identities = 90/121 (74%), Positives = 106/121 (87%), Gaps = 1/121 (0%)
Frame = -1
Query: 612 FDELLTIPEQDEWVYSDGKSTTCVAFILSMYKEAGIFGPISSSIQVTEFTIRDAYMLRIF 433
FDELL +PEQD+W+YSDGKST+C+AFIL MYKEAG+F PISSSIQVTEFTI+DAYML+ F
Sbjct: 403 FDELLAVPEQDDWIYSDGKSTSCIAFILEMYKEAGLFDPISSSIQVTEFTIKDAYMLKFF 462
Query: 432 EDNQTRLPRWCN-NENDGLPFCQILGEYRMELPGYNTLDPYPNMNEHCPSLPPTYDRPSQ 256
E N +R P+WCN N+ LP+CQILG+YRMELPGYNT++PYP+MNEHCPSLPP Y RP
Sbjct: 463 ESNASRFPKWCNDNDVVKLPYCQILGKYRMELPGYNTMEPYPHMNEHCPSLPPKYHRPKN 522
Query: 255 C 253
C
Sbjct: 523 C 523
>ref|NP_200298.1| putative protein; protein id: At5g54870.1, supported by cDNA:
gi_14596222 [Arabidopsis thaliana]
gi|9758267|dbj|BAB08766.1|
gene_id:MBG8.14~pir||T04825~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 531
Score = 197 bits (502), Expect = 7e-50
Identities = 85/121 (70%), Positives = 106/121 (87%), Gaps = 1/121 (0%)
Frame = -1
Query: 612 FDELLTIPEQDEWVYSDGKSTTCVAFILSMYKEAGIFGPISSSIQVTEFTIRDAYMLRIF 433
FD+LL +PE D+W+YSDGKST+C+AFIL MYKEAG+FGP++SSIQVTEFTI+DAYML F
Sbjct: 411 FDKLLAVPELDDWIYSDGKSTSCIAFILEMYKEAGLFGPLASSIQVTEFTIKDAYMLNFF 470
Query: 432 EDNQTRLPRWCN-NENDGLPFCQILGEYRMELPGYNTLDPYPNMNEHCPSLPPTYDRPSQ 256
E+N +RLP WCN N++ LP+CQILG+YRMELPGYNT++PY +MNE CP+LPP Y+RP
Sbjct: 471 ENNASRLPTWCNDNDSVKLPYCQILGKYRMELPGYNTMEPYSHMNEQCPTLPPKYNRPDN 530
Query: 255 C 253
C
Sbjct: 531 C 531
>dbj|BAC55742.1| P0456B03.4 [Oryza sativa (japonica cultivar-group)]
Length = 542
Score = 193 bits (491), Expect = 1e-48
Identities = 89/120 (74%), Positives = 101/120 (84%)
Frame = -1
Query: 612 FDELLTIPEQDEWVYSDGKSTTCVAFILSMYKEAGIFGPISSSIQVTEFTIRDAYMLRIF 433
F++LLTIPEQD+W YSDGKSTTCVAFILSMYK+AG+F P + SIQ IRDAYML+IF
Sbjct: 428 FNQLLTIPEQDDWEYSDGKSTTCVAFILSMYKKAGVFAPFTESIQ-----IRDAYMLKIF 482
Query: 432 EDNQTRLPRWCNNENDGLPFCQILGEYRMELPGYNTLDPYPNMNEHCPSLPPTYDRPSQC 253
EDNQTRLP WCN+ D LPFCQILGEY+MELP YNT++PY NMNE+CPS PPTY RP C
Sbjct: 483 EDNQTRLPSWCNSGADRLPFCQILGEYKMELPEYNTIEPYANMNENCPSSPPTYTRPLGC 542
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,244,278
Number of Sequences: 1393205
Number of extensions: 11175795
Number of successful extensions: 25154
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 24597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25149
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
