Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004365A_C01 KMC004365A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC10806.1| contains ESTs AU055771(S20046),AU081017(S20466),... 39 0.046
gb|AAM63748.1| unknown [Arabidopsis thaliana] 37 0.23
gb|EAA04220.1| agCP3272 [Anopheles gambiae str. PEST] 34 1.1
ref|NP_564549.1| expressed protein; protein id: At1g49560.1, sup... 34 1.1
ref|XP_237133.1| similar to restin (Reed-Steinberg cell-espresse... 34 1.5
>dbj|BAC10806.1| contains ESTs
AU055771(S20046),AU081017(S20466),
AU055772(S20046)~similar to cytoskeletal protein [Oryza
sativa (japonica cultivar-group)]
Length = 353
Score = 38.9 bits (89), Expect = 0.046
Identities = 21/44 (47%), Positives = 28/44 (62%), Gaps = 1/44 (2%)
Frame = -1
Query: 531 SSVSGSPQSPLHLA-AGSRGGTSPTEGDSMEDDDDTKSESYSWR 403
SS SGSP+ PLH + +G GG S S E++D +SESY W+
Sbjct: 311 SSQSGSPEGPLHFSGSGMAGGGSSAATVSCEEEDG-RSESYGWK 353
>gb|AAM63748.1| unknown [Arabidopsis thaliana]
Length = 333
Score = 36.6 bits (83), Expect = 0.23
Identities = 23/47 (48%), Positives = 30/47 (62%), Gaps = 1/47 (2%)
Frame = -1
Query: 549 DSSKGRSSVSGSPQSPLHLAAGSRGGTSPTEGD-SMEDDDDTKSESY 412
+S K R++ S SPQ PL L + T+ T GD SMED +D KSES+
Sbjct: 283 ESLKRRNAQSDSPQGPLQLPS----TTTTTGGDSSMEDVEDAKSESF 325
>gb|EAA04220.1| agCP3272 [Anopheles gambiae str. PEST]
Length = 1995
Score = 34.3 bits (77), Expect = 1.1
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = -1
Query: 552 NDSSKGRSSVSGSPQSPLHLAAGSRGGTSPTEGDSMEDDDDTKSE 418
N S G SS S S S AG+ GGTS E DS ED+++ ++
Sbjct: 1863 NGSHGGGSSSSSSSSSSSSGGAGTAGGTSGNETDSCEDNEEDAAQ 1907
>ref|NP_564549.1| expressed protein; protein id: At1g49560.1, supported by cDNA:
2686. [Arabidopsis thaliana] gi|25405320|pir||B96532
hypothetical protein F14J22.20 [imported] - Arabidopsis
thaliana gi|10120417|gb|AAG13042.1|AC011807_1
Hypothetical protein [Arabidopsis thaliana]
Length = 333
Score = 34.3 bits (77), Expect = 1.1
Identities = 22/47 (46%), Positives = 29/47 (60%), Gaps = 1/47 (2%)
Frame = -1
Query: 549 DSSKGRSSVSGSPQSPLHLAAGSRGGTSPTEGDS-MEDDDDTKSESY 412
+S K ++ S SPQ PL L + T+ T GDS MED +D KSES+
Sbjct: 283 ESLKRSNAQSDSPQGPLQLPST----TTTTGGDSSMEDVEDAKSESF 325
>ref|XP_237133.1| similar to restin (Reed-Steinberg cell-espressed intermediate
filament-asso; restin (Reed-Steinberg cell-espressed
intermediate filament-associated protein) [Rattus
norvegicus]
Length = 623
Score = 33.9 bits (76), Expect = 1.5
Identities = 30/108 (27%), Positives = 46/108 (41%), Gaps = 1/108 (0%)
Frame = -1
Query: 570 MSQDQHNDSSKGRSSVSGSPQSPLHLAAGSRGGTSPTEGDSMEDDDDTKSESYSWRSHIH 391
M + Q D +KG + G SPL +AA + +SP ++ H
Sbjct: 1 MRKVQAEDEAKGLQAARGRAASPLSIAAATMVSSSPATPSNIP----------------H 44
Query: 390 KPGQVYV*DTTPTP*ILQI-KVYMGGVLRLQKNNNT*KRVKGERLLEI 250
KP Q +T+ TP I + K + +L + + VKGER L+I
Sbjct: 45 KPSQSMAKETSATPQISNLTKTASQSISKLSEAGS----VKGERELKI 88
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,486,720
Number of Sequences: 1393205
Number of extensions: 10079576
Number of successful extensions: 25421
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25374
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
