Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004364A_C01 KMC004364A_c01
(395 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00065412.1| hypothetical protein [Microbulbifer degradans... 35 0.30
ref|NP_622553.1| Cell division protein FtsI/penicillin-binding p... 34 0.50
emb|CAB76364.1| matrix metalloproteinase [Cucumis sativus] 33 0.66
pir||T10191 hypothetical protein - cucumber gi|927023|gb|AAA9994... 33 0.66
ref|NP_701476.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.1
>ref|ZP_00065412.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 409
Score = 34.7 bits (78), Expect = 0.30
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 136 GASKSENKFFSSTISSFLQSSFQA*SSEGGC--CRVCPSGSSKDALQ*SFRAGLFFN 300
G+S S + SST SS SS + SS GG C V PSGS+K + + + L FN
Sbjct: 286 GSSSSSSSSSSSTSSSSSSSSSSSSSSSGGSSNCTVVPSGSAKHEINLNNSSCLQFN 342
>ref|NP_622553.1| Cell division protein FtsI/penicillin-binding protein 2
[Thermoanaerobacter tengcongensis]
gi|20515901|gb|AAM24157.1| Cell division protein
FtsI/penicillin-binding protein 2 [Thermoanaerobacter
tengcongensis]
Length = 766
Score = 33.9 bits (76), Expect = 0.50
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 16/82 (19%)
Frame = -1
Query: 395 LASNEVDFLLSFVKREVA-SHVQETASKCIHYLLKNNPALK----LYCN------ASFEL 249
LA+N F + +K EV SH+ ET K IH L KNN K LY N +F+
Sbjct: 67 LATNRPSFSVDILKGEVVDSHLNETILKLIHLLEKNNVKYKDDLPLYLNDKGEPYFNFKN 126
Query: 248 PD-----GQTLQHPPSEDQAWK 198
PD +TL+ ++AWK
Sbjct: 127 PDEGDVSPETLK---EREKAWK 145
>emb|CAB76364.1| matrix metalloproteinase [Cucumis sativus]
Length = 320
Score = 33.5 bits (75), Expect = 0.66
Identities = 18/53 (33%), Positives = 28/53 (51%), Gaps = 3/53 (5%)
Frame = +2
Query: 101 KTIELIF---FLFIKVLPNPKTNSSVLLFHHFSNHLSKLDLQRVGVVGSVHLG 250
K +++IF LF+ + PNP T+S ++L H N S L + + HLG
Sbjct: 5 KALQIIFPFTLLFLSLFPNPNTSSPIILKHSSQNMNSSNSLMFLKNLQGCHLG 57
>pir||T10191 hypothetical protein - cucumber gi|927023|gb|AAA99948.1|
senescence-specific protein
Length = 126
Score = 33.5 bits (75), Expect = 0.66
Identities = 18/53 (33%), Positives = 28/53 (51%), Gaps = 3/53 (5%)
Frame = +2
Query: 101 KTIELIF---FLFIKVLPNPKTNSSVLLFHHFSNHLSKLDLQRVGVVGSVHLG 250
K +++IF LF+ + PNP T+S ++L H N S L + + HLG
Sbjct: 5 KALQIIFPFTLLFLSLFPNPNTSSPIILKHSSQNMNSSNSLMFLKNLQGCHLG 57
>ref|NP_701476.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496643|gb|AAN36200.1|AE014845_55 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1831
Score = 32.7 bits (73), Expect = 1.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 157 CFRIWKHLYK*EKY*FNCFNMKFKYLNILIFVYFIHARNLIQ 32
C+ +Y Y FN FNM+++ LNIL+F F N ++
Sbjct: 1103 CYEDINDMYNINDYIFNDFNMEYRLLNILLFDSFYTGMNNVK 1144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 312,372,320
Number of Sequences: 1393205
Number of extensions: 5968625
Number of successful extensions: 17439
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17437
length of database: 448,689,247
effective HSP length: 107
effective length of database: 299,616,312
effective search space used: 7190791488
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
