Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004362A_C01 KMC004362A_c01
(638 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197366.1| putative protein; protein id: At5g18650.1, supp... 188 5e-47
ref|NP_197683.1| PGPD14 protein; protein id: At5g22920.1, suppor... 119 3e-26
gb|AAD02556.1| PGPD14 [Petunia x hybrida] 119 3e-26
gb|AAM65683.1| PGPD14 protein [Arabidopsis thaliana] 119 4e-26
ref|NP_197938.1| putative protein; protein id: At5g25560.1 [Arab... 108 6e-23
>ref|NP_197366.1| putative protein; protein id: At5g18650.1, supported by cDNA:
gi_17381207, supported by cDNA: gi_20465812 [Arabidopsis
thaliana] gi|17381208|gb|AAL36416.1| unknown protein
[Arabidopsis thaliana] gi|20465813|gb|AAM20011.1|
unknown protein [Arabidopsis thaliana]
Length = 267
Score = 188 bits (478), Expect = 5e-47
Identities = 81/97 (83%), Positives = 88/97 (90%)
Frame = -1
Query: 638 KCGHTMHCDCYQEMIKRDKCCCPICSKSVIDMSRRWKRIDEEIEATVMPDDYRYRKVWIL 459
KCGHTMH +CY EMIKRDK CCPICS+SVIDMS+ W+R+DEEIEAT MP DYR +KVWIL
Sbjct: 171 KCGHTMHVECYNEMIKRDKFCCPICSRSVIDMSKTWQRLDEEIEATAMPSDYRDKKVWIL 230
Query: 458 CNDCNDTTEVYFHIIGHKCGHCSSYNTRAIAPPVLPQ 348
CNDCNDTTEV+FHIIG KCGHC SYNTRAIAPPVLPQ
Sbjct: 231 CNDCNDTTEVHFHIIGQKCGHCRSYNTRAIAPPVLPQ 267
>ref|NP_197683.1| PGPD14 protein; protein id: At5g22920.1, supported by cDNA: 41666.,
supported by cDNA: gi_15450520 [Arabidopsis thaliana]
gi|10177239|dbj|BAB10613.1| PGPD14 protein [Arabidopsis
thaliana] gi|15450521|gb|AAK96553.1| AT5g22920/MRN17_15
[Arabidopsis thaliana] gi|27363264|gb|AAO11551.1|
At5g22920/MRN17_15 [Arabidopsis thaliana]
Length = 291
Score = 119 bits (298), Expect = 3e-26
Identities = 48/88 (54%), Positives = 61/88 (68%)
Frame = -1
Query: 638 KCGHTMHCDCYQEMIKRDKCCCPICSKSVIDMSRRWKRIDEEIEATVMPDDYRYRKVWIL 459
+CGHTMH +C ++M ++ CP+CSKS+ DMS WK++DEE+ A MP Y + VWIL
Sbjct: 181 RCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMVWIL 240
Query: 458 CNDCNDTTEVYFHIIGHKCGHCSSYNTR 375
CNDC T V FH+I HKC C SYNTR
Sbjct: 241 CNDCGSNTNVRFHLIAHKCSSCGSYNTR 268
>gb|AAD02556.1| PGPD14 [Petunia x hybrida]
Length = 285
Score = 119 bits (298), Expect = 3e-26
Identities = 46/87 (52%), Positives = 66/87 (74%)
Frame = -1
Query: 635 CGHTMHCDCYQEMIKRDKCCCPICSKSVIDMSRRWKRIDEEIEATVMPDDYRYRKVWILC 456
CGHTMH +C +M + ++ CP+CS+S DMSR W+++D+E+ +T MP+ Y+ + VWILC
Sbjct: 181 CGHTMHLECVMQMEQHNQYSCPVCSRSYCDMSRVWEKLDQEVASTPMPEMYQNKMVWILC 240
Query: 455 NDCNDTTEVYFHIIGHKCGHCSSYNTR 375
NDC +T+EV FHI+ KC +C SYNTR
Sbjct: 241 NDCGETSEVNFHIVARKCPNCKSYNTR 267
>gb|AAM65683.1| PGPD14 protein [Arabidopsis thaliana]
Length = 274
Score = 119 bits (297), Expect = 4e-26
Identities = 48/88 (54%), Positives = 61/88 (68%)
Frame = -1
Query: 638 KCGHTMHCDCYQEMIKRDKCCCPICSKSVIDMSRRWKRIDEEIEATVMPDDYRYRKVWIL 459
+CGHTMH +C ++M ++ CP+CSKS+ DMS WK++DEE+ A MP Y + VWIL
Sbjct: 164 RCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKLYENKMVWIL 223
Query: 458 CNDCNDTTEVYFHIIGHKCGHCSSYNTR 375
CNDC T V FH+I HKC C SYNTR
Sbjct: 224 CNDCGSNTNVRFHLIAHKCSSCGSYNTR 251
>ref|NP_197938.1| putative protein; protein id: At5g25560.1 [Arabidopsis thaliana]
Length = 272
Score = 108 bits (270), Expect = 6e-23
Identities = 46/87 (52%), Positives = 59/87 (66%)
Frame = -1
Query: 635 CGHTMHCDCYQEMIKRDKCCCPICSKSVIDMSRRWKRIDEEIEATVMPDDYRYRKVWILC 456
CGHT+H C +EM + CP+CSKSV DMS+ W++ D EI AT MP+ Y+ R V ILC
Sbjct: 182 CGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMVQILC 241
Query: 455 NDCNDTTEVYFHIIGHKCGHCSSYNTR 375
NDC EV +H++ KC +C SYNTR
Sbjct: 242 NDCGKKAEVQYHVVAQKCPNCKSYNTR 268
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,529,880
Number of Sequences: 1393205
Number of extensions: 10613330
Number of successful extensions: 27576
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 26516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27534
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
