Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004360A_C01 KMC004360A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC12996.1| putative AUX1-like permease [Medicago truncatula... 166 1e-40
gb|AAM55305.1| auxin influx carrier protein [Medicago truncatula] 159 2e-38
gb|AAF21982.1|AF115543_1 AUX1-like protein [Populus tremula x Po... 155 4e-37
dbj|BAC41318.1| AUX1-like auxin transport protein [Cucumis sativus] 153 2e-36
ref|NP_565882.1| expressed protein; protein id: At2g38120.1, sup... 150 1e-35
>emb|CAC12996.1| putative AUX1-like permease [Medicago truncatula]
gi|21586462|gb|AAM55304.1| auxin influx carrier protein
[Medicago truncatula]
Length = 484
Score = 166 bits (421), Expect = 1e-40
Identities = 74/91 (81%), Positives = 81/91 (88%), Gaps = 2/91 (2%)
Frame = -1
Query: 579 AAAHMLIYRKASARQNAVEKPPFFLPNWTAMFVINTFIVVWTLVVGFGFGGWASMTNFIR 400
+AAHML YRKASAR+NA EKPPFF+P+WTAM++ N FIV+W LVVGFGFGGWASMTNFIR
Sbjct: 394 SAAHMLTYRKASARKNAAEKPPFFMPSWTAMYIFNAFIVIWVLVVGFGFGGWASMTNFIR 453
Query: 399 QIDTFGLFAKCYQCKPP--TPTAPPPHALHH 313
QIDTFGLFAKCYQCKPP APPPHALHH
Sbjct: 454 QIDTFGLFAKCYQCKPPPVMAAAPPPHALHH 484
>gb|AAM55305.1| auxin influx carrier protein [Medicago truncatula]
Length = 482
Score = 159 bits (403), Expect = 2e-38
Identities = 74/89 (83%), Positives = 79/89 (88%), Gaps = 1/89 (1%)
Frame = -1
Query: 579 AAAHMLIYRKASARQNAVEKPPFFLPNWTAMFVINTFIVVWTLVVGFGFGGWASMTNFIR 400
A AHML YR ASAR+NAVEKPP FLP+WTA++V+N FIVVW LVVGFGFGGWASMTNFIR
Sbjct: 394 ALAHMLTYRTASARKNAVEKPPSFLPSWTAVYVLNAFIVVWVLVVGFGFGGWASMTNFIR 453
Query: 399 QIDTFGLFAKCYQCKPPT-PTAPPPHALH 316
QIDTFGLFAKCYQCKPPT P AP PHA H
Sbjct: 454 QIDTFGLFAKCYQCKPPTPPQAPSPHARH 482
>gb|AAF21982.1|AF115543_1 AUX1-like protein [Populus tremula x Populus tremuloides]
Length = 477
Score = 155 bits (391), Expect = 4e-37
Identities = 67/83 (80%), Positives = 74/83 (88%)
Frame = -1
Query: 573 AHMLIYRKASARQNAVEKPPFFLPNWTAMFVINTFIVVWTLVVGFGFGGWASMTNFIRQI 394
AHML YRK+SARQNA EKPPFFLP+WTAM+VINTF+VVW LVVGFGFGGWAS+TNF+RQ+
Sbjct: 395 AHMLTYRKSSARQNAAEKPPFFLPSWTAMYVINTFVVVWVLVVGFGFGGWASVTNFVRQV 454
Query: 393 DTFGLFAKCYQCKPPTPTAPPPH 325
DTFGLFAKCYQCKP P PH
Sbjct: 455 DTFGLFAKCYQCKPAVAAPPRPH 477
>dbj|BAC41318.1| AUX1-like auxin transport protein [Cucumis sativus]
Length = 489
Score = 153 bits (386), Expect = 2e-36
Identities = 67/88 (76%), Positives = 77/88 (87%)
Frame = -1
Query: 579 AAAHMLIYRKASARQNAVEKPPFFLPNWTAMFVINTFIVVWTLVVGFGFGGWASMTNFIR 400
AAAHML YRKASA+QNA EKPPFFLP+WTAM+V+N+FIVVW V GFGFGGWA++TNF+R
Sbjct: 402 AAAHMLTYRKASAKQNAAEKPPFFLPSWTAMYVLNSFIVVWIFVFGFGFGGWATITNFVR 461
Query: 399 QIDTFGLFAKCYQCKPPTPTAPPPHALH 316
QI++FGLFAKCYQCKP P APPP H
Sbjct: 462 QINSFGLFAKCYQCKPSHPPAPPPTHRH 489
>ref|NP_565882.1| expressed protein; protein id: At2g38120.1, supported by cDNA:
31586., supported by cDNA: gi_15450815, supported by
cDNA: gi_20259903 [Arabidopsis thaliana]
gi|7485590|pir||T01244 hypothetical protein At2g38120
[imported] - Arabidopsis thaliana
gi|1531758|emb|CAA67308.1| AUX1 [Arabidopsis thaliana]
gi|3335360|gb|AAC27161.1| expressed protein [Arabidopsis
thaliana] gi|15450816|gb|AAK96679.1| Unknown protein
[Arabidopsis thaliana] gi|20259904|gb|AAM13299.1|
unknown protein [Arabidopsis thaliana]
gi|21592703|gb|AAM64652.1| LAX1 / AUX1-like permease
[Arabidopsis thaliana]
Length = 485
Score = 150 bits (379), Expect = 1e-35
Identities = 66/88 (75%), Positives = 75/88 (85%), Gaps = 1/88 (1%)
Frame = -1
Query: 573 AHMLIYRKASARQNAVEKPPFFLPNWTAMFVINTFIVVWTLVVGFGFGGWASMTNFIRQI 394
AHML YR ASARQNA EKPPFF+P+WTAM+V+N F+VVW L+VGFGFGGWAS+TNF+RQ+
Sbjct: 396 AHMLTYRSASARQNAAEKPPFFMPSWTAMYVLNAFVVVWVLIVGFGFGGWASVTNFVRQV 455
Query: 393 DTFGLFAKCYQCKPPTPTA-PPPHALHH 313
DTFGLFAKCYQCKP A P ALHH
Sbjct: 456 DTFGLFAKCYQCKPAAAAAHAPVSALHH 483
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,192,650
Number of Sequences: 1393205
Number of extensions: 12760473
Number of successful extensions: 42189
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 37631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41913
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
