Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004359A_C01 KMC004359A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD53474.1|AF137253_1 mixed lineage leukemia-like protein [Si... 40 0.017
gb|AAD53477.1|AF137256_1 mixed lineage leukemia-like protein [St... 40 0.017
gb|AAC41377.1| MLL [Takifugu rubripes] 40 0.017
gb|ZP_00122106.1| hypothetical protein [Haemophilus somnus 129PT] 37 0.14
ref|NP_702376.1| hypothetical protein [Plasmodium falciparum 3D7... 34 0.91
>gb|AAD53474.1|AF137253_1 mixed lineage leukemia-like protein [Siganus sp.]
Length = 264
Score = 40.0 bits (92), Expect = 0.017
Identities = 25/66 (37%), Positives = 36/66 (53%)
Frame = +1
Query: 283 ATSTRIIT*TNQPNTNRPKREGTMVGDRDAEKNKPHNPSKNRTHLTMGGDANQNSTTTRR 462
+T+T T ++ P+ + PKR G +R AEK PH+ SK GG A ++T R
Sbjct: 160 STTTTTATSSSTPHKSTPKRRGR---ERHAEKPDPHDSSK---EADSGGGAVSSNTREGR 213
Query: 463 KKQKKN 480
K QK+N
Sbjct: 214 KNQKEN 219
>gb|AAD53477.1|AF137256_1 mixed lineage leukemia-like protein [Stromateus sp.]
Length = 273
Score = 40.0 bits (92), Expect = 0.017
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +1
Query: 283 ATSTRIIT*TNQPNTNRPKREGTMVGDRDAEKNKPHNPSKNRTHLTMGGDANQNSTTTR- 459
+T+T T ++ P+ N PKR G +R EK + H+PSK + GG A S+ TR
Sbjct: 166 STTTTTATSSSTPHKNTPKRRGR---ERHTEKLESHDPSKEGDN--SGGAAGAVSSNTRE 220
Query: 460 -RKKQKKN 480
RK QK+N
Sbjct: 221 GRKNQKEN 228
>gb|AAC41377.1| MLL [Takifugu rubripes]
Length = 4498
Score = 40.0 bits (92), Expect = 0.017
Identities = 25/66 (37%), Positives = 36/66 (53%)
Frame = +1
Query: 283 ATSTRIIT*TNQPNTNRPKREGTMVGDRDAEKNKPHNPSKNRTHLTMGGDANQNSTTTRR 462
+T+T T ++ PN + PKR G DR EK PH+ SK+ + G A ++T R
Sbjct: 3280 STTTTTTTSSSTPNKSTPKRRGR---DRHVEKPDPHDLSKDADN---SGGAVSSNTREGR 3333
Query: 463 KKQKKN 480
K QK+N
Sbjct: 3334 KNQKEN 3339
>gb|ZP_00122106.1| hypothetical protein [Haemophilus somnus 129PT]
Length = 4238
Score = 37.0 bits (84), Expect = 0.14
Identities = 32/136 (23%), Positives = 55/136 (39%)
Frame = +1
Query: 106 SKGTKKNLKRTI*DELNGYSTINGAKDLGNKLLLGCTTRKTFEATHLKQHLHQWQDKP*A 285
S+ TK K+T +NG S KD G TT + + LK D
Sbjct: 3117 SEETKDGTKQTFKTTINGKSIALEGKD-------GTTTNMSSDKITLKDKDGNTADMT-G 3168
Query: 286 TSTRIIT*TNQPNTNRPKREGTMVGDRDAEKNKPHNPSKNRTHLTMGGDANQNSTTTRRK 465
+ +P + ++G VGD+DA + + LT+ G +++ + + K
Sbjct: 3169 NEIALKGKDGKPTIAKLNQDGLTVGDKDATNGDKTHAVYGKDGLTVHGKDGKSAVSLKMK 3228
Query: 466 KQKKNGHLNPTSKISR 513
+KNG PT + ++
Sbjct: 3229 MSEKNGKSVPTLEFAK 3244
>ref|NP_702376.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497559|gb|AAN37100.1|AE014824_19 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1504
Score = 34.3 bits (77), Expect = 0.91
Identities = 29/119 (24%), Positives = 48/119 (39%), Gaps = 8/119 (6%)
Frame = +1
Query: 181 KDLGNKLLLGCTTRKTFEATHLKQHLHQ-WQDKP*ATSTRII---T*TNQPNTNRPKREG 348
K+ N TRK H H + + ++P T II T N N N K +G
Sbjct: 1246 KNGNNTYFTNNETRKDILEVHELNHKEKDFVNQPNCTLQDIILDNTKNNNENYNLEKGDG 1305
Query: 349 TMVGDRDAEKNKPHNPSKNRTH----LTMGGDANQNSTTTRRKKQKKNGHLNPTSKISR 513
+ + +K ++N TH L N N+ TT ++ +++ H+N + R
Sbjct: 1306 VIDDEHAGTTDKEEEDNENITHGDSVLNDNDVVNMNNNTTESERNRRSTHINNNDSLVR 1364
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,083,904
Number of Sequences: 1393205
Number of extensions: 11090703
Number of successful extensions: 41710
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41304
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
