Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004358A_C01 KMC004358A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_596212.1| WD domain protein [Schizosaccharomyces pombe] g... 34 1.2
pir||T40094 Trp-Asp repeat protein - fission yeast (Schizosaccha... 34 1.2
emb|CAB05928.1| unknown [Streptococcus pneumoniae] 33 2.0
ref|NP_738512.1| putative penicillin-binding protein [Corynebact... 33 2.7
emb|CAD38727.1| hypothetical protein [Homo sapiens] 32 3.5
>ref|NP_596212.1| WD domain protein [Schizosaccharomyces pombe]
gi|6723898|emb|CAB39845.2| WD domain protein
[Schizosaccharomyces pombe]
Length = 426
Score = 33.9 bits (76), Expect = 1.2
Identities = 17/44 (38%), Positives = 26/44 (58%)
Frame = -2
Query: 303 DNQVQIVSLKSKIFSLKSIILLKIQNSLPKIQNVFGCCYCLFRF 172
DN VQI+ LK+ I K+I L N++ + ++G YC+F F
Sbjct: 165 DNSVQIIDLKNNILQKKAISCLDTTNAVGCLGTLYG-QYCIFNF 207
>pir||T40094 Trp-Asp repeat protein - fission yeast (Schizosaccharomyces pombe)
Length = 418
Score = 33.9 bits (76), Expect = 1.2
Identities = 17/44 (38%), Positives = 26/44 (58%)
Frame = -2
Query: 303 DNQVQIVSLKSKIFSLKSIILLKIQNSLPKIQNVFGCCYCLFRF 172
DN VQI+ LK+ I K+I L N++ + ++G YC+F F
Sbjct: 157 DNSVQIIDLKNNILQKKAISCLDTTNAVGCLGTLYG-QYCIFNF 199
>emb|CAB05928.1| unknown [Streptococcus pneumoniae]
Length = 356
Score = 33.1 bits (74), Expect = 2.0
Identities = 17/57 (29%), Positives = 27/57 (46%)
Frame = -2
Query: 396 FQNGIQHYPYHKCSHLSGLNLKTHF*PVDKLDNQVQIVSLKSKIFSLKSIILLKIQN 226
+ G++H Y S + G N K F DK+DN + + + K L++ KI N
Sbjct: 132 YDGGVEHLVYASSSSVYGGNKKIPFATEDKVDNPISLYAATKKTNELQAYAYSKIYN 188
>ref|NP_738512.1| putative penicillin-binding protein [Corynebacterium efficiens
YS-314] gi|23493743|dbj|BAC18712.1| putative
penicillin-binding protein [Corynebacterium efficiens
YS-314]
Length = 618
Score = 32.7 bits (73), Expect = 2.7
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 276 LGKQFELGCPIYQPAKNESSSSIPRGESICDMDNVEYHSEISSTSPIG 419
+GKQF LG P + + S+P GE+ D Y + SP G
Sbjct: 441 VGKQFGLGIDYRIPGLDTITGSVPEGETALDRTEAGYGQGLDLASPFG 488
>emb|CAD38727.1| hypothetical protein [Homo sapiens]
Length = 310
Score = 32.3 bits (72), Expect = 3.5
Identities = 22/85 (25%), Positives = 36/85 (41%), Gaps = 2/85 (2%)
Frame = +3
Query: 249 WILRR--RFWILGKQFELGCPIYQPAKNESSSSIPRGESICDMDNVEYHSEISSTSPIGS 422
W+ RR + W+LGK F+ CP+ + S + P IC N E ++ +
Sbjct: 192 WLTRRNGKQWLLGKTFDTFCPLGPALVTKDSVADPHNLKICCRVNGEVVQSSNTNQMVFK 251
Query: 423 RGICEYQSDISSTVFPFISFVARDV 497
D+ + V F++F DV
Sbjct: 252 ------TEDLIAWVSQFVTFYPGDV 270
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,391,462
Number of Sequences: 1393205
Number of extensions: 9859761
Number of successful extensions: 22155
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 21660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22154
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
