Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004355A_C01 KMC004355A_c01
(424 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA85654.1| hsr203J homolog [Pisum sativum] 165 1e-40
pir||S42807 HSR203J protein - common tobacco gi|444002|emb|CAA54... 145 1e-34
gb|AAF62404.1|AF212184_1 cell death associated protein [Nicotian... 145 1e-34
dbj|BAC15624.1| hsr203J [Nicotiana tabacum] 142 1e-33
dbj|BAA74434.1| similar to hsr203J [Lycopersicon esculentum] 142 1e-33
>dbj|BAA85654.1| hsr203J homolog [Pisum sativum]
Length = 339
Score = 165 bits (417), Expect = 1e-40
Identities = 77/104 (74%), Positives = 90/104 (86%)
Frame = -1
Query: 424 SYALPLGSNKDHPITCPMGAAAPPLEGLKLPPFLLCMAEMDLVWDTEMEYYEAMKKANKD 245
S +LP+GSNKDHPITCPMG AAPPL G KLPPFLLC+AE DL+ D +MEYYEAMKK NK+
Sbjct: 236 SLSLPIGSNKDHPITCPMGEAAPPLAGFKLPPFLLCVAEKDLLRDPQMEYYEAMKKDNKE 295
Query: 244 VELYVSKGMTHSFYLNKIAVDADPITSAQTDALIARVKEFIDMH 113
V+L+VSK MTHSFYLNKIAVD DP SA+ +AL+ARVK+FI+ H
Sbjct: 296 VDLFVSKNMTHSFYLNKIAVDMDPTVSAELNALMARVKDFIEKH 339
>pir||S42807 HSR203J protein - common tobacco gi|444002|emb|CAA54393.1| HSR203J
[Nicotiana tabacum]
Length = 335
Score = 145 bits (366), Expect = 1e-34
Identities = 67/102 (65%), Positives = 82/102 (79%)
Frame = -1
Query: 418 ALPLGSNKDHPITCPMGAAAPPLEGLKLPPFLLCMAEMDLVWDTEMEYYEAMKKANKDVE 239
ALP+GSNKDH ITCPMG AAP +E LKLPP+L C+AE DL+ DTEME+YEAMKK KDVE
Sbjct: 234 ALPVGSNKDHQITCPMGEAAPAVEELKLPPYLYCVAEKDLIKDTEMEFYEAMKKGEKDVE 293
Query: 238 LYVSKGMTHSFYLNKIAVDADPITSAQTDALIARVKEFIDMH 113
L+++ G+ HSFYLNKIAV DP+T ++T+ L V EFI+ H
Sbjct: 294 LFINNGVGHSFYLNKIAVRMDPVTGSETEKLYEAVAEFINKH 335
>gb|AAF62404.1|AF212184_1 cell death associated protein [Nicotiana tabacum]
Length = 335
Score = 145 bits (366), Expect = 1e-34
Identities = 67/102 (65%), Positives = 82/102 (79%)
Frame = -1
Query: 418 ALPLGSNKDHPITCPMGAAAPPLEGLKLPPFLLCMAEMDLVWDTEMEYYEAMKKANKDVE 239
ALP+GSNKDH ITCPMG AAP +E LKLPP+L C+AE DL+ DTEME+YEAMKK KDVE
Sbjct: 234 ALPVGSNKDHQITCPMGEAAPAVEELKLPPYLYCVAEKDLIKDTEMEFYEAMKKGEKDVE 293
Query: 238 LYVSKGMTHSFYLNKIAVDADPITSAQTDALIARVKEFIDMH 113
L+++ G+ HSFYLNKIAV DP+T ++T+ L V EFI+ H
Sbjct: 294 LFINNGVGHSFYLNKIAVRMDPVTGSETEKLCEAVAEFINKH 335
>dbj|BAC15624.1| hsr203J [Nicotiana tabacum]
Length = 335
Score = 142 bits (357), Expect = 1e-33
Identities = 63/100 (63%), Positives = 83/100 (83%)
Frame = -1
Query: 418 ALPLGSNKDHPITCPMGAAAPPLEGLKLPPFLLCMAEMDLVWDTEMEYYEAMKKANKDVE 239
ALP+GSNKDHPITCPMG AAP +E LKLPP+L C+AE DL+ DTEME+YEAM+K KD+E
Sbjct: 234 ALPVGSNKDHPITCPMGEAAPAVEELKLPPYLNCVAEKDLMKDTEMEFYEAMEKGEKDIE 293
Query: 238 LYVSKGMTHSFYLNKIAVDADPITSAQTDALIARVKEFID 119
L+++ G+ HSFYLNK AV+ DP+T+++T+ + V EFI+
Sbjct: 294 LFINNGVGHSFYLNKTAVEIDPVTASETEKFLEAVAEFIN 333
>dbj|BAA74434.1| similar to hsr203J [Lycopersicon esculentum]
Length = 335
Score = 142 bits (357), Expect = 1e-33
Identities = 64/102 (62%), Positives = 80/102 (77%)
Frame = -1
Query: 418 ALPLGSNKDHPITCPMGAAAPPLEGLKLPPFLLCMAEMDLVWDTEMEYYEAMKKANKDVE 239
ALP+GS KDHPITCPMG AAP +E LKLPP+L C+AE DL+ DTEME+YE++K KDVE
Sbjct: 234 ALPIGSTKDHPITCPMGDAAPAVEELKLPPYLYCVAEKDLIEDTEMEFYESLKTGEKDVE 293
Query: 238 LYVSKGMTHSFYLNKIAVDADPITSAQTDALIARVKEFIDMH 113
L ++ G+ HSFYLNKIAVD DP+T + T+ L + EFI+ H
Sbjct: 294 LLINNGVGHSFYLNKIAVDMDPVTGSATEKLFEAIAEFINKH 335
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,510,941
Number of Sequences: 1393205
Number of extensions: 9942233
Number of successful extensions: 46195
Number of sequences better than 10.0: 209
Number of HSP's better than 10.0 without gapping: 38055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44801
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 6889859208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
