Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004353A_C01 KMC004353A_c01
(845 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172635.1| unknown protein; protein id: At1g11700.1, suppo... 82 2e-23
gb|AAM64551.1| unknown [Arabidopsis thaliana] 82 5e-22
ref|NP_564788.1| expressed protein; protein id: At1g61930.1, sup... 82 5e-22
ref|NP_193924.1| putative protein; protein id: At4g21930.1 [Arab... 77 8e-18
gb|AAM53278.1| putative protein [Arabidopsis thaliana] gi|231976... 77 8e-18
>ref|NP_172635.1| unknown protein; protein id: At1g11700.1, supported by cDNA:
gi_13194779 [Arabidopsis thaliana]
gi|25354618|pir||F86250 hypothetical protein [imported]
- Arabidopsis thaliana
gi|4835787|gb|AAD30253.1|AC007296_14 ESTs gb|R65381 and
gb|T44635 come from this gene. [Arabidopsis thaliana]
gi|13194780|gb|AAK15552.1|AF348581_1 unknown protein
[Arabidopsis thaliana] gi|27808534|gb|AAO24547.1|
At1g11700 [Arabidopsis thaliana]
Length = 201
Score = 81.6 bits (200), Expect(2) = 2e-23
Identities = 40/73 (54%), Positives = 55/73 (74%), Gaps = 6/73 (8%)
Frame = -3
Query: 630 LSSVESLHGVDDDLDESELEVVPPHEYLARSRKKAA------DSVFVGVGRTLKGRDLSR 469
++SVES+H D++ +E ++PPHEYLA+S+++ + SVF GVGRTLKGR+L R
Sbjct: 129 VNSVESIHESDEEEEEDSGMMMPPHEYLAKSQQRRSRKSGGGGSVFEGVGRTLKGRELRR 188
Query: 468 VRDAVWSQTGFNG 430
VRDA+WSQTGF G
Sbjct: 189 VRDAIWSQTGFYG 201
Score = 50.1 bits (118), Expect(2) = 2e-23
Identities = 34/71 (47%), Positives = 38/71 (52%), Gaps = 5/71 (7%)
Frame = -1
Query: 836 RDLNKSNHHPFAGLSLAFEDPPAGGPVSASARIVHQLRAHDGLASTPRG-----RHVASS 672
RD N GLSLAFED S+S RIVHQ+R G R +ASS
Sbjct: 62 RDAVVRNGRVGGGLSLAFED------ASSSPRIVHQIRGGGEGGGGGGGGGRVERQLASS 115
Query: 671 APMNVPDWSKI 639
AP+NVPDWSKI
Sbjct: 116 APVNVPDWSKI 126
>gb|AAM64551.1| unknown [Arabidopsis thaliana]
Length = 203
Score = 81.6 bits (200), Expect(2) = 5e-22
Identities = 43/75 (57%), Positives = 55/75 (73%), Gaps = 8/75 (10%)
Frame = -3
Query: 630 LSSVESLHGVDDDLDESELE-VVPPHEYLARSRKKAAD-------SVFVGVGRTLKGRDL 475
+ SVES+H +DD+ DE E ++PPHEYLA+S+ + + SVF GVGRTLKGR+L
Sbjct: 129 VDSVESIHELDDEDDEDEESGMMPPHEYLAKSQARRSRKIGGGGASVFDGVGRTLKGREL 188
Query: 474 SRVRDAVWSQTGFNG 430
RVRDA+WSQTGF G
Sbjct: 189 RRVRDAIWSQTGFYG 203
Score = 45.4 bits (106), Expect(2) = 5e-22
Identities = 28/54 (51%), Positives = 33/54 (60%)
Frame = -1
Query: 800 GLSLAFEDPPAGGPVSASARIVHQLRAHDGLASTPRGRHVASSAPMNVPDWSKI 639
GLSLAFE P+S S IV ++ G R R +ASSAP+NVPDWSKI
Sbjct: 75 GLSLAFEGSLVAPPLS-SPMIVQKIHGGGGEGEEDR-RKLASSAPVNVPDWSKI 126
>ref|NP_564788.1| expressed protein; protein id: At1g61930.1, supported by cDNA:
30230. [Arabidopsis thaliana] gi|7486680|pir||T02137
hypothetical protein F8K4.12 - Arabidopsis thaliana
gi|3367524|gb|AAC28509.1| F8K4.12 [Arabidopsis thaliana]
Length = 203
Score = 81.6 bits (200), Expect(2) = 5e-22
Identities = 43/75 (57%), Positives = 55/75 (73%), Gaps = 8/75 (10%)
Frame = -3
Query: 630 LSSVESLHGVDDDLDESELE-VVPPHEYLARSRKKAAD-------SVFVGVGRTLKGRDL 475
+ SVES+H +DD+ DE E ++PPHEYLA+S+ + + SVF GVGRTLKGR+L
Sbjct: 129 VDSVESIHELDDEDDEDEESGMMPPHEYLAKSQARRSRKIGGGGASVFDGVGRTLKGREL 188
Query: 474 SRVRDAVWSQTGFNG 430
RVRDA+WSQTGF G
Sbjct: 189 RRVRDAIWSQTGFYG 203
Score = 45.4 bits (106), Expect(2) = 5e-22
Identities = 28/54 (51%), Positives = 33/54 (60%)
Frame = -1
Query: 800 GLSLAFEDPPAGGPVSASARIVHQLRAHDGLASTPRGRHVASSAPMNVPDWSKI 639
GLSLAFE P S+S IV ++ G R R +ASSAP+NVPDWSKI
Sbjct: 75 GLSLAFEGSLVAPP-SSSPMIVQKIHGGGGEGEEDR-RKLASSAPVNVPDWSKI 126
>ref|NP_193924.1| putative protein; protein id: At4g21930.1 [Arabidopsis thaliana]
gi|7487828|pir||T05475 hypothetical protein T8O5.140 -
Arabidopsis thaliana gi|2894571|emb|CAA17160.1| putative
protein [Arabidopsis thaliana]
gi|7269038|emb|CAB79148.1| putative protein [Arabidopsis
thaliana]
Length = 193
Score = 76.6 bits (187), Expect(2) = 8e-18
Identities = 42/76 (55%), Positives = 54/76 (70%), Gaps = 9/76 (11%)
Frame = -3
Query: 630 LSSVESLHGVDDDLDESELE-------VVPPHEYLA-RSRK-KAADSVFVGVGRTLKGRD 478
+ SV+S+H ++D D +++ +VPPHEY+A RSR SVF+GVGRTLKGRD
Sbjct: 118 VESVKSMHNNNNDNDNADVADCDWESAMVPPHEYVAARSRNGDGGSSVFLGVGRTLKGRD 177
Query: 477 LSRVRDAVWSQTGFNG 430
+ RVRDAVWSQTGF G
Sbjct: 178 MRRVRDAVWSQTGFYG 193
Score = 36.2 bits (82), Expect(2) = 8e-18
Identities = 15/19 (78%), Positives = 17/19 (88%)
Frame = -1
Query: 695 RGRHVASSAPMNVPDWSKI 639
R RHVA+SAP+ VPDWSKI
Sbjct: 97 RKRHVATSAPVKVPDWSKI 115
>gb|AAM53278.1| putative protein [Arabidopsis thaliana] gi|23197638|gb|AAN15346.1|
putative protein [Arabidopsis thaliana]
Length = 183
Score = 76.6 bits (187), Expect(2) = 8e-18
Identities = 42/76 (55%), Positives = 54/76 (70%), Gaps = 9/76 (11%)
Frame = -3
Query: 630 LSSVESLHGVDDDLDESELE-------VVPPHEYLA-RSRK-KAADSVFVGVGRTLKGRD 478
+ SV+S+H ++D D +++ +VPPHEY+A RSR SVF+GVGRTLKGRD
Sbjct: 108 VESVKSMHNNNNDNDNADVADCDWESAMVPPHEYVAARSRNGDGGSSVFLGVGRTLKGRD 167
Query: 477 LSRVRDAVWSQTGFNG 430
+ RVRDAVWSQTGF G
Sbjct: 168 MRRVRDAVWSQTGFYG 183
Score = 36.2 bits (82), Expect(2) = 8e-18
Identities = 15/19 (78%), Positives = 17/19 (88%)
Frame = -1
Query: 695 RGRHVASSAPMNVPDWSKI 639
R RHVA+SAP+ VPDWSKI
Sbjct: 87 RKRHVATSAPVKVPDWSKI 105
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 785,980,825
Number of Sequences: 1393205
Number of extensions: 19538419
Number of successful extensions: 124925
Number of sequences better than 10.0: 971
Number of HSP's better than 10.0 without gapping: 84056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116837
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44316199683
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
