Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004352A_C01 KMC004352A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB65281.1| L3 Ribosomal protein [Medicago sativa subsp. x v... 336 9e-92
ref|NP_176352.1| ribosomal protein; protein id: At1g61580.1 [Ara... 305 2e-82
pir||JQ0772 ribosomal protein L3.e (clone ARP2), cytosolic - Ara... 305 2e-82
pir||JQ0771 ribosomal protein L3.e (clone ARP1), cytosolic - Ara... 305 2e-82
ref|NP_175009.1| ribosomal protein; protein id: At1g43170.1, sup... 305 3e-82
>emb|CAB65281.1| L3 Ribosomal protein [Medicago sativa subsp. x varia]
Length = 388
Score = 336 bits (862), Expect = 9e-92
Identities = 157/170 (92%), Positives = 167/170 (97%)
Frame = +1
Query: 34 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPSKSPKLTAFLGYKAGMTHIVREV 213
MSHRKFEHPRHGSLGFLPRKRAARHRGKVK+FPKDDP+K PKLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPPKLTAFLGYKAGMTHIVREV 60
Query: 214 EKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGMRTLNTVWAQHLSEEVKRRFYK 393
EKPGSKLHKKETCEPVTIIETPPMV+VGVVGYVKTPRG+RTLNTVW QHLSEE+KRRFYK
Sbjct: 61 EKPGSKLHKKETCEPVTIIETPPMVVVGVVGYVKTPRGLRTLNTVWTQHLSEEIKRRFYK 120
Query: 394 NWCKSKKKAFSKYSKQFESEEGKKNVQAQLEKIKKYATVVRVLAHTQIRK 543
NWCKSKKKAFSKYSKQ+ES+EGKKN+Q QLEK+KKYATV+RVLAHTQIRK
Sbjct: 121 NWCKSKKKAFSKYSKQYESDEGKKNIQTQLEKLKKYATVIRVLAHTQIRK 170
>ref|NP_176352.1| ribosomal protein; protein id: At1g61580.1 [Arabidopsis thaliana]
gi|21542436|sp|P22738|RL3B_ARATH 60S ribosomal protein
L3 gi|25295006|pir||B96641 60s ribosomal protein L3
[imported] - Arabidopsis thaliana
gi|4585874|gb|AAD25547.1|AC005850_4 60s ribosomal
protein L3 [Arabidopsis thaliana]
gi|28392966|gb|AAO41918.1| putative ribosomal protein
[Arabidopsis thaliana] gi|28973595|gb|AAO64122.1|
putative ribosomal protein [Arabidopsis thaliana]
Length = 390
Score = 305 bits (782), Expect = 2e-82
Identities = 142/170 (83%), Positives = 163/170 (95%)
Frame = +1
Query: 34 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPSKSPKLTAFLGYKAGMTHIVREV 213
MSHRKFEHPRHGSLGFLPRKRA+RHRGKVK+FPKDDP+K +LT+FLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDV 60
Query: 214 EKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGMRTLNTVWAQHLSEEVKRRFYK 393
EKPGSKLHKKETCE VTIIETPPMV+VGVVGYVKTPRG+R+L TVWAQHLSEE++RRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYK 120
Query: 394 NWCKSKKKAFSKYSKQFESEEGKKNVQAQLEKIKKYATVVRVLAHTQIRK 543
NW KSKKKAF++YSK+ E+EEGKK++Q+QLEK+KKY +V+RVLAHTQIRK
Sbjct: 121 NWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRK 170
>pir||JQ0772 ribosomal protein L3.e (clone ARP2), cytosolic - Arabidopsis
thaliana gi|806279|gb|AAA66161.1| ribosomal protein
Length = 390
Score = 305 bits (782), Expect = 2e-82
Identities = 142/170 (83%), Positives = 163/170 (95%)
Frame = +1
Query: 34 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPSKSPKLTAFLGYKAGMTHIVREV 213
MSHRKFEHPRHGSLGFLPRKRA+RHRGKVK+FPKDDP+K +LT+FLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDV 60
Query: 214 EKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGMRTLNTVWAQHLSEEVKRRFYK 393
EKPGSKLHKKETCE VTIIETPPMV+VGVVGYVKTPRG+R+L TVWAQHLSEE++RRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYK 120
Query: 394 NWCKSKKKAFSKYSKQFESEEGKKNVQAQLEKIKKYATVVRVLAHTQIRK 543
NW KSKKKAF++YSK+ E+EEGKK++Q+QLEK+KKY +V+RVLAHTQIRK
Sbjct: 121 NWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRK 170
>pir||JQ0771 ribosomal protein L3.e (clone ARP1), cytosolic - Arabidopsis
thaliana gi|166858|gb|AAA66160.1| ribosomal protein
Length = 389
Score = 305 bits (782), Expect = 2e-82
Identities = 144/170 (84%), Positives = 159/170 (92%)
Frame = +1
Query: 34 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPSKSPKLTAFLGYKAGMTHIVREV 213
MSHRKFEHPRHGSLGFLPRKRA RHRGKVK+FPKDD +K K TAF+GYKAGMTHIVREV
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 214 EKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGMRTLNTVWAQHLSEEVKRRFYK 393
EKPGSKLHKKETCE VTIIETP MV+VGVV YVKTPRG+R+LNTVWAQHLSEEV+RRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 394 NWCKSKKKAFSKYSKQFESEEGKKNVQAQLEKIKKYATVVRVLAHTQIRK 543
NW KSKKKAF+ Y+KQ++SE+GKK +QAQLEK+KKYATV+RVLAHTQIRK
Sbjct: 121 NWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKVKKYATVIRVLAHTQIRK 170
>ref|NP_175009.1| ribosomal protein; protein id: At1g43170.1, supported by cDNA:
14534., supported by cDNA: gi_11935190, supported by
cDNA: gi_13487799, supported by cDNA: gi_13605656,
supported by cDNA: gi_14517417, supported by cDNA:
gi_15450558, supported by cDNA: gi_15982760, supported
by cDNA: gi_166857 [Arabidopsis thaliana]
gi|27735225|sp|P17094|RL3A_ARATH 60S ribosomal protein
L3 gi|25295007|pir||E96498 L3 cytoplasmic ribosomal
protein [imported] - Arabidopsis thaliana
gi|3617741|gb|AAC36018.1| L3 cytoplasmic ribosomal
protein [Arabidopsis thaliana]
gi|11935191|gb|AAG42011.1|AF327421_1 putative ribosomal
protein [Arabidopsis thaliana]
gi|13487800|gb|AAK27726.1|AF361101_1 putative ribosomal
protein [Arabidopsis thaliana]
gi|13605657|gb|AAK32822.1|AF361809_1 At1g43170/F1I21_18
[Arabidopsis thaliana] gi|14517418|gb|AAK62599.1|
At1g43170/F1I21_18 [Arabidopsis thaliana]
gi|15450559|gb|AAK96457.1| At1g43170/F1I21_18
[Arabidopsis thaliana] gi|15982761|gb|AAL09721.1|
At1g43170/F1I21_18 [Arabidopsis thaliana]
Length = 389
Score = 305 bits (780), Expect = 3e-82
Identities = 144/170 (84%), Positives = 159/170 (92%)
Frame = +1
Query: 34 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPSKSPKLTAFLGYKAGMTHIVREV 213
MSHRKFEHPRHGSLGFLPRKRA RHRGKVK+FPKDD +K K TAF+GYKAGMTHIVREV
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 214 EKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGMRTLNTVWAQHLSEEVKRRFYK 393
EKPGSKLHKKETCE VTIIETP MV+VGVV YVKTPRG+R+LNTVWAQHLSEEV+RRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 394 NWCKSKKKAFSKYSKQFESEEGKKNVQAQLEKIKKYATVVRVLAHTQIRK 543
NW KSKKKAF+ Y+KQ++SE+GKK +QAQLEK+KKYATV+RVLAHTQIRK
Sbjct: 121 NWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRK 170
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,848,362
Number of Sequences: 1393205
Number of extensions: 11395014
Number of successful extensions: 37898
Number of sequences better than 10.0: 134
Number of HSP's better than 10.0 without gapping: 35896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37754
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
