Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004350A_C01 KMC004350A_c01
(353 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_701756.1| hypothetical protein [Plasmodium falciparum 3D7... 33 0.70
pir||JC4864 aspartate transaminase (EC 2.6.1.1) - Bacillus circu... 30 5.9
gb|AAO51987.1| similar to Plasmodium falciparum. Hypothetical pr... 30 5.9
gb|EAA05893.1| agCP14535 [Anopheles gambiae str. PEST] 30 5.9
emb|CAC20926.1| PimE protein [Streptomyces natalensis] 30 5.9
>ref|NP_701756.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496928|gb|AAN36480.1|AE014850_45 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 2309
Score = 33.5 bits (75), Expect = 0.70
Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 2/37 (5%)
Frame = +3
Query: 141 NNNNNNIKSRE*TNN*SS--FPKFFSAEKLVFFFNLV 245
NNNNNN K++ N S F + E+L+FFFNL+
Sbjct: 1521 NNNNNNKKNKNEKNKMSELIFNSEYHTERLIFFFNLL 1557
>pir||JC4864 aspartate transaminase (EC 2.6.1.1) - Bacillus circulans
gi|1147557|emb|CAA64186.1| Aspartate aminotransferase
[Bacillus circulans subsp. alkalophilus]
Length = 432
Score = 30.4 bits (67), Expect = 5.9
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -1
Query: 320 SSVVTNQQYPPAPAAAPMDLASLWGY*IEKENQLFS*KEFGKRTSIISLFSGFDVV 153
S+ YP AP A +L SLW + +EN K FG + +L G +V
Sbjct: 75 SAFAPKDLYPYAPPAGKPELRSLWRDKMLEENPSLQGKSFGNPIATNALTHGLSIV 130
>gb|AAO51987.1| similar to Plasmodium falciparum. Hypothetical protein
[Dictyostelium discoideum]
Length = 714
Score = 30.4 bits (67), Expect = 5.9
Identities = 19/58 (32%), Positives = 28/58 (47%)
Frame = +3
Query: 87 TKTA*LDSNS*KLDRQVINNNNNNIKSRE*TNN*SSFPKFFSAEKLVFFFNLVTPQAS 260
T T+ ++ N+ D NNNNNN + NN + S +K+ NL+TP S
Sbjct: 547 TNTSNVNLNNHNNDSNNNNNNNNNNNNNNNNNNNNKTQISTSIDKITSTTNLITPITS 604
>gb|EAA05893.1| agCP14535 [Anopheles gambiae str. PEST]
Length = 7667
Score = 30.4 bits (67), Expect = 5.9
Identities = 18/43 (41%), Positives = 27/43 (61%)
Frame = -2
Query: 292 HLLQLQHQWT*LACGVTKLKKKTNFSAEKNLGKELQLLVYSLD 164
+L+QLQ QW L + +L+ K+N EK+ G L L+V+S D
Sbjct: 7073 NLVQLQQQWDQLESILQELEVKSNLLLEKDRG--LDLVVHSRD 7113
>emb|CAC20926.1| PimE protein [Streptomyces natalensis]
Length = 549
Score = 30.4 bits (67), Expect = 5.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 263 GPLVLQLEQVDTADLSQQKKRIQCSHLF 346
G VL ++Q+DTA + K I C HLF
Sbjct: 299 GSYVLSVDQIDTAGQTVAHKEISCRHLF 326
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 285,092,326
Number of Sequences: 1393205
Number of extensions: 5367782
Number of successful extensions: 38600
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33616
length of database: 448,689,247
effective HSP length: 93
effective length of database: 319,121,182
effective search space used: 7658908368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
