Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004349A_C01 KMC004349A_c01
(388 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193515.1| hypothetical protein; protein id: At4g17800.1, ... 35 0.30
gb|EAA39163.1| GLP_178_26121_9007 [Giardia lamblia ATCC 50803] 33 1.1
ref|NP_691468.1| cyclase [Oceanobacillus iheyensis HTE831] gi|22... 32 1.5
ref|NP_572665.1| CG15207-PA [Drosophila melanogaster] gi|7292575... 30 5.7
ref|NP_180468.1| hypothetical protein; protein id: At2g29040.1 [... 30 7.4
>ref|NP_193515.1| hypothetical protein; protein id: At4g17800.1, supported by cDNA:
gi_17933298, supported by cDNA: gi_20453386 [Arabidopsis
thaliana] gi|7485086|pir||C71448 hypothetical protein -
Arabidopsis thaliana gi|2245139|emb|CAB10560.1|
hypothetical protein [Arabidopsis thaliana]
gi|7268533|emb|CAB78783.1| hypothetical protein
[Arabidopsis thaliana]
gi|17933299|gb|AAL48232.1|AF446359_1 AT4g17800/dl4935c
[Arabidopsis thaliana] gi|20453387|gb|AAM19932.1|
AT4g17800/dl4935c [Arabidopsis thaliana]
Length = 292
Score = 34.7 bits (78), Expect = 0.30
Identities = 18/30 (60%), Positives = 19/30 (63%)
Frame = -3
Query: 377 GLPFFNLPLTTAMQSKVSLPAVDHGWAGNS 288
GLPFFNLP+ MQ V LP GW GNS
Sbjct: 261 GLPFFNLPMN--MQPNVQLPV--EGWPGNS 286
>gb|EAA39163.1| GLP_178_26121_9007 [Giardia lamblia ATCC 50803]
Length = 5704
Score = 32.7 bits (73), Expect = 1.1
Identities = 13/42 (30%), Positives = 23/42 (53%)
Frame = +2
Query: 233 HIRLTKQTNTLKMKNVPPPNFPPNHDPQLAMKLYSASPSSAA 358
H+ +Q KM+++PPP+ P P LA++++ S A
Sbjct: 3193 HVAYDRQLAEAKMRHIPPPDTPRYISPSLALRVFEMHTESKA 3234
>ref|NP_691468.1| cyclase [Oceanobacillus iheyensis HTE831]
gi|22776226|dbj|BAC12503.1| cyclase [Oceanobacillus
iheyensis]
Length = 254
Score = 32.3 bits (72), Expect = 1.5
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = -3
Query: 365 FNLPLTTAMQSKVSLPAVDHGWAGN 291
+NLPLTTA+ + V++P + G AGN
Sbjct: 183 YNLPLTTAIATAVNIPVIASGGAGN 207
>ref|NP_572665.1| CG15207-PA [Drosophila melanogaster] gi|7292575|gb|AAF47975.1|
CG15207-PA [Drosophila melanogaster]
Length = 1037
Score = 30.4 bits (67), Expect = 5.7
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +1
Query: 1 NPKDRYSYTKTHESTPIN*VEQVQLKLTTTSYNP*ATETRKQDEDDLNYII 153
NPK+++ TH P+ +E+ + + S+N +T Q+++ +I
Sbjct: 695 NPKEQHFVLNTHSECPVRRIEKAEKEAEAESHNQNQKQTHNQNQNQDQVVI 745
>ref|NP_180468.1| hypothetical protein; protein id: At2g29040.1 [Arabidopsis
thaliana] gi|7487871|pir||T02734 hypothetical protein
At2g29040 [imported] - Arabidopsis thaliana
gi|3461844|gb|AAC33230.1| hypothetical protein
[Arabidopsis thaliana]
Length = 720
Score = 30.0 bits (66), Expect = 7.4
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 206 STSDGSIFNHIRLTKQTNTLKMKNVPPPNFPPNHDPQLA 322
S+S ++ NH RL +Q N + ++P N P NH+P A
Sbjct: 33 SSSAKTVHNHERLFRQENII---DLPVENVPQNHEPDEA 68
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 327,293,903
Number of Sequences: 1393205
Number of extensions: 6348330
Number of successful extensions: 17305
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17229
length of database: 448,689,247
effective HSP length: 104
effective length of database: 303,795,927
effective search space used: 7291102248
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
