Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004345A_C01 KMC004345A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB88727.1| M-phase phosphoprotein-1 [Homo sapiens] 35 0.89
ref|NP_057279.1| M-phase phosphoprotein 1; mitotic kinesin-like ... 35 0.89
dbj|BAB69456.1| mitotic kinesin-related protein [Homo sapiens] 35 0.89
emb|CAB70720.1| hypothetical protein [Homo sapiens] 35 0.89
dbj|BAB15194.1| unnamed protein product [Homo sapiens] 35 0.89
>gb|AAB88727.1| M-phase phosphoprotein-1 [Homo sapiens]
Length = 753
Score = 34.7 bits (78), Expect = 0.89
Identities = 31/107 (28%), Positives = 49/107 (44%)
Frame = -1
Query: 564 VQLPRSAAEAAHLENIDDIEGDAVDRRCRLASLEEIINNLSEIRLWTSVLLPLDEGHQKM 385
+ L A EA ++ N +++ A DR E +E+ + T+ L D QK
Sbjct: 400 MMLITQAKEAENIRN-KEMKKYAEDR-------ERFFKQQNEMEILTAQLTEKDSDLQK- 450
Query: 384 WDELKDGLMMLREMEVRDATSLAVRSDNELNYLSYSIKELSDYCRQI 244
W E +D L+ E++++ S V+ DNE+ L I E S QI
Sbjct: 451 WREERDQLVAALEIQLKALISSNVQKDNEIEQLKRIISETSKIETQI 497
>ref|NP_057279.1| M-phase phosphoprotein 1; mitotic kinesin-like protein [Homo sapiens]
gi|7512524|pir||T17272 hypothetical protein
DKFZp434B0435.1 - human gi|5911999|emb|CAB55962.1|
hypothetical protein [Homo sapiens]
Length = 1780
Score = 34.7 bits (78), Expect = 0.89
Identities = 31/107 (28%), Positives = 49/107 (44%)
Frame = -1
Query: 564 VQLPRSAAEAAHLENIDDIEGDAVDRRCRLASLEEIINNLSEIRLWTSVLLPLDEGHQKM 385
+ L A EA ++ N +++ A DR E +E+ + T+ L D QK
Sbjct: 1427 MMLITQAKEAENIRN-KEMKKYAEDR-------ERFFKQQNEMEILTAQLTEKDSDLQK- 1477
Query: 384 WDELKDGLMMLREMEVRDATSLAVRSDNELNYLSYSIKELSDYCRQI 244
W E +D L+ E++++ S V+ DNE+ L I E S QI
Sbjct: 1478 WREERDQLVAALEIQLKALISSNVQKDNEIEQLKRIISETSKIETQI 1524
>dbj|BAB69456.1| mitotic kinesin-related protein [Homo sapiens]
Length = 1820
Score = 34.7 bits (78), Expect = 0.89
Identities = 31/107 (28%), Positives = 49/107 (44%)
Frame = -1
Query: 564 VQLPRSAAEAAHLENIDDIEGDAVDRRCRLASLEEIINNLSEIRLWTSVLLPLDEGHQKM 385
+ L A EA ++ N +++ A DR E +E+ + T+ L D QK
Sbjct: 1467 MMLITQAKEAENIRN-KEMKKYAEDR-------ERFFKQQNEMEILTAQLTEKDSDLQK- 1517
Query: 384 WDELKDGLMMLREMEVRDATSLAVRSDNELNYLSYSIKELSDYCRQI 244
W E +D L+ E++++ S V+ DNE+ L I E S QI
Sbjct: 1518 WREERDQLVAALEIQLKALISSNVQKDNEIEQLKRIISETSKIETQI 1564
>emb|CAB70720.1| hypothetical protein [Homo sapiens]
Length = 1206
Score = 34.7 bits (78), Expect = 0.89
Identities = 31/107 (28%), Positives = 49/107 (44%)
Frame = -1
Query: 564 VQLPRSAAEAAHLENIDDIEGDAVDRRCRLASLEEIINNLSEIRLWTSVLLPLDEGHQKM 385
+ L A EA ++ N +++ A DR E +E+ + T+ L D QK
Sbjct: 853 MMLITQAKEAENIRN-KEMKKYAEDR-------ERFFKQQNEMEILTAQLTEKDSDLQK- 903
Query: 384 WDELKDGLMMLREMEVRDATSLAVRSDNELNYLSYSIKELSDYCRQI 244
W E +D L+ E++++ S V+ DNE+ L I E S QI
Sbjct: 904 WREERDQLVAALEIQLKALISSNVQKDNEIEQLKRIISETSKIETQI 950
>dbj|BAB15194.1| unnamed protein product [Homo sapiens]
Length = 512
Score = 34.7 bits (78), Expect = 0.89
Identities = 31/107 (28%), Positives = 49/107 (44%)
Frame = -1
Query: 564 VQLPRSAAEAAHLENIDDIEGDAVDRRCRLASLEEIINNLSEIRLWTSVLLPLDEGHQKM 385
+ L A EA ++ N +++ A DR E +E+ + T+ L D QK
Sbjct: 159 MMLITQAKEAENIRN-KEMKKYAEDR-------ERFFKQQNEMEILTAQLTEKDSDLQK- 209
Query: 384 WDELKDGLMMLREMEVRDATSLAVRSDNELNYLSYSIKELSDYCRQI 244
W E +D L+ E++++ S V+ DNE+ L I E S QI
Sbjct: 210 WREERDQLVAALEIQLKALISSNVQKDNEIEQLKRIISETSKIETQI 256
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,254,359
Number of Sequences: 1393205
Number of extensions: 9781169
Number of successful extensions: 27972
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 26023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27908
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
