Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004344A_C02 KMC004344A_c02
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567105.1| actin - like protein; protein id: At3g60830.1, ... 170 1e-41
pir||T47894 actin-like protein - Arabidopsis thaliana gi|7329693... 170 1e-41
gb|AAK09223.1|AC084320_10 putative actin [Oryza sativa (japonica... 163 2e-39
sp|O18499|ACT1_SACKO ACTIN 1 gi|2653412|emb|CAA74015.1| actin [S... 82 7e-15
gb|AAD11530.1| actin [Girardia tigrina] 82 7e-15
>ref|NP_567105.1| actin - like protein; protein id: At3g60830.1, supported by cDNA:
38096., supported by cDNA: gi_20466389 [Arabidopsis
thaliana] gi|20466390|gb|AAM20512.1| actin -like protein
[Arabidopsis thaliana]
gi|21427469|gb|AAM53247.1|AF507915_1 actin-related
protein 7 [Arabidopsis thaliana]
gi|21489920|tpg|DAA00028.1| TPA: actin-related protein
7; AtARP7 [Arabidopsis thaliana]
gi|21593327|gb|AAM65276.1| actin-like protein
[Arabidopsis thaliana] gi|22136342|gb|AAM91249.1| actin
-like protein [Arabidopsis thaliana]
Length = 363
Score = 170 bits (431), Expect = 1e-41
Identities = 78/88 (88%), Positives = 85/88 (95%)
Frame = -2
Query: 588 LLENTVVCGGTSSMTGFEDRFQKESNLSSSAVQPTLVKPPEYMPENLTMYSAWVGGAILA 409
LLENTV+CGGT+SMTGFE RFQKE+NL SSA++PTLVKPPEYMPENL MYSAWVGGAILA
Sbjct: 276 LLENTVLCGGTTSMTGFESRFQKEANLCSSAIRPTLVKPPEYMPENLGMYSAWVGGAILA 335
Query: 408 KVVFPQNQHITKADYDETGPSIVHRKCF 325
KVVFPQNQH+TKADYDETGPS+VHRKCF
Sbjct: 336 KVVFPQNQHVTKADYDETGPSVVHRKCF 363
>pir||T47894 actin-like protein - Arabidopsis thaliana
gi|7329693|emb|CAB82687.1| actin-like protein
[Arabidopsis thaliana]
Length = 368
Score = 170 bits (431), Expect = 1e-41
Identities = 78/88 (88%), Positives = 85/88 (95%)
Frame = -2
Query: 588 LLENTVVCGGTSSMTGFEDRFQKESNLSSSAVQPTLVKPPEYMPENLTMYSAWVGGAILA 409
LLENTV+CGGT+SMTGFE RFQKE+NL SSA++PTLVKPPEYMPENL MYSAWVGGAILA
Sbjct: 281 LLENTVLCGGTTSMTGFESRFQKEANLCSSAIRPTLVKPPEYMPENLGMYSAWVGGAILA 340
Query: 408 KVVFPQNQHITKADYDETGPSIVHRKCF 325
KVVFPQNQH+TKADYDETGPS+VHRKCF
Sbjct: 341 KVVFPQNQHVTKADYDETGPSVVHRKCF 368
>gb|AAK09223.1|AC084320_10 putative actin [Oryza sativa (japonica cultivar-group)]
Length = 339
Score = 163 bits (412), Expect = 2e-39
Identities = 73/88 (82%), Positives = 84/88 (94%)
Frame = -2
Query: 588 LLENTVVCGGTSSMTGFEDRFQKESNLSSSAVQPTLVKPPEYMPENLTMYSAWVGGAILA 409
LLENT++CGGT+SMTGFEDRFQ+E+NLS+SA+ P+LVKPPEYMPENL YSAW+GGAILA
Sbjct: 252 LLENTMLCGGTASMTGFEDRFQREANLSASAICPSLVKPPEYMPENLARYSAWLGGAILA 311
Query: 408 KVVFPQNQHITKADYDETGPSIVHRKCF 325
KVVFPQNQH+TK DYDETGPSIVH+KCF
Sbjct: 312 KVVFPQNQHVTKGDYDETGPSIVHKKCF 339
>sp|O18499|ACT1_SACKO ACTIN 1 gi|2653412|emb|CAA74015.1| actin [Saccoglossus kowalevskii]
Length = 376
Score = 81.6 bits (200), Expect = 7e-15
Identities = 43/89 (48%), Positives = 57/89 (63%), Gaps = 1/89 (1%)
Frame = -2
Query: 588 LLENTVVCGGTSSMTGFEDRFQKE-SNLSSSAVQPTLVKPPEYMPENLTMYSAWVGGAIL 412
L NTV+ GGTS G DR QKE ++L+ S ++ ++ PPE YS W+GG+IL
Sbjct: 294 LYANTVLSGGTSMYPGIADRMQKEITSLAPSTMKIKIIAPPE------RKYSVWIGGSIL 347
Query: 411 AKVVFPQNQHITKADYDETGPSIVHRKCF 325
A + Q I+K +YDE+GPSIVHRKCF
Sbjct: 348 ASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>gb|AAD11530.1| actin [Girardia tigrina]
Length = 376
Score = 81.6 bits (200), Expect = 7e-15
Identities = 43/89 (48%), Positives = 57/89 (63%), Gaps = 1/89 (1%)
Frame = -2
Query: 588 LLENTVVCGGTSSMTGFEDRFQKE-SNLSSSAVQPTLVKPPEYMPENLTMYSAWVGGAIL 412
L NTV+CGG++ G DR QKE S+L+ ++ +V PPE YS W+GG+IL
Sbjct: 294 LYANTVLCGGSTMYPGIADRMQKEISSLAPPTMKIKIVAPPE------RKYSVWIGGSIL 347
Query: 411 AKVVFPQNQHITKADYDETGPSIVHRKCF 325
A + Q I+K +YDE+GPSIVHRKCF
Sbjct: 348 ASLSTFQAMWISKQEYDESGPSIVHRKCF 376
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,405,258
Number of Sequences: 1393205
Number of extensions: 9294281
Number of successful extensions: 23058
Number of sequences better than 10.0: 1143
Number of HSP's better than 10.0 without gapping: 21988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22384
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
