Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004343A_C01 KMC004343A_c01
(841 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC26106.1| unnamed protein product [Mus musculus] 50 4e-05
ref|NP_659100.1| RIKEN cDNA E330036L07; hypothetical protein MGC... 50 4e-05
dbj|BAC40442.1| unnamed protein product [Mus musculus] 50 4e-05
gb|AAH45639.1| sentrin/SUMO-specific protease [Homo sapiens] 49 7e-05
ref|NP_055369.1| sentrin/SUMO-specific protease 1 [Homo sapiens]... 48 2e-04
>dbj|BAC26106.1| unnamed protein product [Mus musculus]
Length = 319
Score = 50.1 bits (118), Expect = 4e-05
Identities = 32/95 (33%), Positives = 43/95 (44%), Gaps = 5/95 (5%)
Frame = -2
Query: 804 IFSTPYNCGGHWVLIVINASDASITYYDSMRGDPRTYTAMKNLFDSGLMTYRAQREHVLP 625
I P + G HW L V++ SITYYDSM G + N L+ Y Q
Sbjct: 198 ILLVPIHLGVHWCLAVVDFRRKSITYYDSMGG-------INNEACRILLQYLKQESVDKK 250
Query: 624 KKKSNTINW-----SSVKCPHQMNDVDCGYYVLRY 535
+K+ +T W S + P QMN DCG + +Y
Sbjct: 251 RKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKY 285
>ref|NP_659100.1| RIKEN cDNA E330036L07; hypothetical protein MGC27975 [Mus musculus]
gi|26006877|sp|P59110|SEN1_MOUSE Sentrin-specific
protease 1 (Sentrin/SUMO-specific protease SENP1)
gi|18605617|gb|AAH23129.1| Similar to
sentrin/SUMO-specific protease [Mus musculus]
gi|26324514|dbj|BAC26011.1| unnamed protein product [Mus
musculus]
Length = 640
Score = 50.1 bits (118), Expect = 4e-05
Identities = 32/95 (33%), Positives = 43/95 (44%), Gaps = 5/95 (5%)
Frame = -2
Query: 804 IFSTPYNCGGHWVLIVINASDASITYYDSMRGDPRTYTAMKNLFDSGLMTYRAQREHVLP 625
I P + G HW L V++ SITYYDSM G + N L+ Y Q
Sbjct: 519 ILLVPIHLGVHWCLAVVDFRRKSITYYDSMGG-------INNEACRILLQYLKQESVDKK 571
Query: 624 KKKSNTINW-----SSVKCPHQMNDVDCGYYVLRY 535
+K+ +T W S + P QMN DCG + +Y
Sbjct: 572 RKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKY 606
>dbj|BAC40442.1| unnamed protein product [Mus musculus]
Length = 640
Score = 50.1 bits (118), Expect = 4e-05
Identities = 32/95 (33%), Positives = 43/95 (44%), Gaps = 5/95 (5%)
Frame = -2
Query: 804 IFSTPYNCGGHWVLIVINASDASITYYDSMRGDPRTYTAMKNLFDSGLMTYRAQREHVLP 625
I P + G HW L V++ SITYYDSM G + N L+ Y Q
Sbjct: 519 ILLVPIHLGVHWCLAVVDFRRKSITYYDSMGG-------INNEACRILLQYLKQESVDKK 571
Query: 624 KKKSNTINW-----SSVKCPHQMNDVDCGYYVLRY 535
+K+ +T W S + P QMN DCG + +Y
Sbjct: 572 RKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKY 606
>gb|AAH45639.1| sentrin/SUMO-specific protease [Homo sapiens]
Length = 635
Score = 49.3 bits (116), Expect = 7e-05
Identities = 31/95 (32%), Positives = 43/95 (44%), Gaps = 5/95 (5%)
Frame = -2
Query: 804 IFSTPYNCGGHWVLIVINASDASITYYDSMRGDPRTYTAMKNLFDSGLMTYRAQREHVLP 625
I P + G HW L V++ +ITYYDSM G + N L+ Y Q
Sbjct: 514 ILLVPIHLGVHWCLAVVDFRKKNITYYDSMGG-------INNEACRILLQYLKQESIDKK 566
Query: 624 KKKSNTINW-----SSVKCPHQMNDVDCGYYVLRY 535
+K+ +T W S + P QMN DCG + +Y
Sbjct: 567 RKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKY 601
>ref|NP_055369.1| sentrin/SUMO-specific protease 1 [Homo sapiens]
gi|26006886|sp|Q9P0U3|SEN1_HUMAN Sentrin-specific
protease 1 (Sentrin/SUMO-specific protease SENP1)
gi|6906859|gb|AAF31171.1|AF149770_1
sentrin/SUMO-specific protease [Homo sapiens]
Length = 643
Score = 48.1 bits (113), Expect = 2e-04
Identities = 30/94 (31%), Positives = 42/94 (43%), Gaps = 4/94 (4%)
Frame = -2
Query: 804 IFSTPYNCGGHWVLIVINASDASITYYDSMRGDPRTYTAMKNLFDSGLMTYRAQREHVLP 625
I P + G HW L V++ +ITYYDSM G + N L+ Y Q
Sbjct: 523 ILLVPIHLGVHWCLAVVDFRKKNITYYDSMGG-------INNEACRILLQYLKQESIDKK 575
Query: 624 KKKSNTINW----SSVKCPHQMNDVDCGYYVLRY 535
+K+ +T W + P QMN DCG + +Y
Sbjct: 576 RKEFDTNGWQLFSKKSQIPQQMNGSDCGMFACKY 609
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 685,037,601
Number of Sequences: 1393205
Number of extensions: 14232462
Number of successful extensions: 31226
Number of sequences better than 10.0: 143
Number of HSP's better than 10.0 without gapping: 30014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31143
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 43758763209
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
