Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004342A_C01 KMC004342A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9SZX3|ASSY_ARATH Argininosuccinate synthase, chloroplast pre... 95 5e-19
ref|NP_194214.2| argininosuccinate synthase -like protein; prote... 95 5e-19
pir||T06667 argininosuccinate synthase (EC 6.3.4.5) - Arabidopsi... 95 5e-19
gb|AAN87486.1| Argininosuccinate synthase [Heliobacillus mobilis] 72 5e-12
pdb|1KH1|A Chain A, Crystal Structure Of Thermus Thermophilus Hb... 65 6e-10
>sp|Q9SZX3|ASSY_ARATH Argininosuccinate synthase, chloroplast precursor
(Citrulline--aspartate ligase)
Length = 523
Score = 95.1 bits (235), Expect = 5e-19
Identities = 46/57 (80%), Positives = 52/57 (90%)
Frame = -2
Query: 563 LKLFKGSVGVTSRQSPFSLYRQDISSFESGEIYDQADAAGFIRLYGLPMRVRAMLEQ 393
LKL+KGSV VT RQSP SLYRQDISSFE EIY+QADAAGFIRLYGLPM++RAML++
Sbjct: 465 LKLYKGSVSVTGRQSPNSLYRQDISSFEGSEIYNQADAAGFIRLYGLPMKIRAMLKK 521
>ref|NP_194214.2| argininosuccinate synthase -like protein; protein id: At4g24830.1,
supported by cDNA: gi_17529035, supported by cDNA:
gi_20259084 [Arabidopsis thaliana]
gi|17529036|gb|AAL38728.1| putative argininosuccinate
synthase [Arabidopsis thaliana]
gi|20259085|gb|AAM14258.1| putative argininosuccinate
synthase [Arabidopsis thaliana]
Length = 494
Score = 95.1 bits (235), Expect = 5e-19
Identities = 46/57 (80%), Positives = 52/57 (90%)
Frame = -2
Query: 563 LKLFKGSVGVTSRQSPFSLYRQDISSFESGEIYDQADAAGFIRLYGLPMRVRAMLEQ 393
LKL+KGSV VT RQSP SLYRQDISSFE EIY+QADAAGFIRLYGLPM++RAML++
Sbjct: 436 LKLYKGSVSVTGRQSPNSLYRQDISSFEGSEIYNQADAAGFIRLYGLPMKIRAMLKK 492
>pir||T06667 argininosuccinate synthase (EC 6.3.4.5) - Arabidopsis thaliana
gi|4678262|emb|CAB41123.1| argininosuccinate
synthase-like protein [Arabidopsis thaliana]
gi|7269334|emb|CAB79393.1| argininosuccinate
synthase-like protein [Arabidopsis thaliana]
Length = 498
Score = 95.1 bits (235), Expect = 5e-19
Identities = 46/57 (80%), Positives = 52/57 (90%)
Frame = -2
Query: 563 LKLFKGSVGVTSRQSPFSLYRQDISSFESGEIYDQADAAGFIRLYGLPMRVRAMLEQ 393
LKL+KGSV VT RQSP SLYRQDISSFE EIY+QADAAGFIRLYGLPM++RAML++
Sbjct: 440 LKLYKGSVSVTGRQSPNSLYRQDISSFEGSEIYNQADAAGFIRLYGLPMKIRAMLKK 496
>gb|AAN87486.1| Argininosuccinate synthase [Heliobacillus mobilis]
Length = 408
Score = 72.0 bits (175), Expect = 5e-12
Identities = 32/57 (56%), Positives = 44/57 (77%)
Frame = -2
Query: 563 LKLFKGSVGVTSRQSPFSLYRQDISSFESGEIYDQADAAGFIRLYGLPMRVRAMLEQ 393
+KLFKGSV +SP+SLY ++ S+F E+Y+Q DA GFI L+GLPM+VRA++EQ
Sbjct: 347 MKLFKGSVTPAGAKSPYSLYNEEFSTFGRDEVYNQKDAEGFINLFGLPMKVRALMEQ 403
>pdb|1KH1|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase gi|20150775|pdb|1KH1|B
Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase gi|20150776|pdb|1KH1|C
Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase gi|20150777|pdb|1KH1|D
Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase gi|20150778|pdb|1KH2|A
Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Atp
gi|20150779|pdb|1KH2|B Chain B, Crystal Structure Of
Thermus Thermophilus Hb8 Argininosuccinate Synthetase In
Complex With Atp gi|20150780|pdb|1KH2|C Chain C, Crystal
Structure Of Thermus Thermophilus Hb8 Argininosuccinate
Synthetase In Complex With Atp gi|20150781|pdb|1KH2|D
Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Atp
gi|20150950|pdb|1KOR|A Chain A, Crystal Structure Of
Thermus Thermophilus Hb8 Argininosuccinate Synthetase In
Complex With Inhibitors gi|20150951|pdb|1KOR|B Chain B,
Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Inhibitors
gi|20150952|pdb|1KOR|C Chain C, Crystal Structure Of
Thermus Thermophilus Hb8 Argininosuccinate Synthetase In
Complex With Inhibitors gi|20150953|pdb|1KOR|D Chain D,
Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Inhibitors
Length = 400
Score = 65.1 bits (157), Expect = 6e-10
Identities = 31/57 (54%), Positives = 43/57 (75%)
Frame = -2
Query: 563 LKLFKGSVGVTSRQSPFSLYRQDISSFESGEIYDQADAAGFIRLYGLPMRVRAMLEQ 393
LKL+KG+V V R++P SLYRQD+ SF+ YDQ DA GFI++ L +RVRA++E+
Sbjct: 339 LKLYKGNVYVVGRKAPKSLYRQDLVSFDEAGGYDQKDAEGFIKIQALRLRVRALVER 395
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,059,177
Number of Sequences: 1393205
Number of extensions: 9766618
Number of successful extensions: 19328
Number of sequences better than 10.0: 395
Number of HSP's better than 10.0 without gapping: 19023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19299
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
