Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004340A_C01 KMC004340A_c01
(670 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190228.1| dTDP-glucose 4-6-dehydratases-like protein; pro... 230 1e-59
pir||T51252 dTDPglucose 4,6-dehydratase (EC 4.2.1.46) [imported]... 229 3e-59
ref|NP_200737.1| dTDP-glucose 4-6-dehydratase - like protein; pr... 227 1e-58
gb|AAK53026.1|AF375442_1 AT5g59290/mnc17_180 [Arabidopsis thalia... 227 1e-58
dbj|BAB40967.1| UDP-D-glucuronate carboxy-lyase [Pisum sativum] 227 1e-58
>ref|NP_190228.1| dTDP-glucose 4-6-dehydratases-like protein; protein id:
At3g46440.1, supported by cDNA: 31901., supported by
cDNA: gi_18175745, supported by cDNA: gi_20465506
[Arabidopsis thaliana] gi|11270114|pir||T45701
dTDP-glucose 4-6-dehydratases-like protein - Arabidopsis
thaliana gi|6522623|emb|CAB62035.1| dTDP-glucose
4-6-dehydratases-like protein [Arabidopsis thaliana]
gi|18175746|gb|AAL59920.1| putative dTDP-glucose
4-6-dehydratase [Arabidopsis thaliana]
gi|20465507|gb|AAM20236.1| putative dTDP-glucose
4-6-dehydratases [Arabidopsis thaliana]
gi|21592727|gb|AAM64676.1| dTDP-glucose
4-6-dehydratases-like protein [Arabidopsis thaliana]
Length = 341
Score = 230 bits (587), Expect = 1e-59
Identities = 110/123 (89%), Positives = 118/123 (95%)
Frame = -2
Query: 669 IAQALRGEPLTVQSPGTQTRSFCYVSDLVDGLIRLMEGSDTGPINLGNPGEFTMTELAET 490
IAQALRGE LTVQ PGTQTRSFCYVSD+VDGL+RLMEG DTGPIN+GNPGEFTM ELAET
Sbjct: 219 IAQALRGEALTVQKPGTQTRSFCYVSDMVDGLMRLMEGDDTGPINIGNPGEFTMVELAET 278
Query: 489 VKELINPKVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRLRLGV 310
VKELINP +EIKMVENTPDDPRQRKPDITKAKE+LGWEPKVKLR+GLPLMEEDFRLRLGV
Sbjct: 279 VKELINPSIEIKMVENTPDDPRQRKPDITKAKEVLGWEPKVKLREGLPLMEEDFRLRLGV 338
Query: 309 NQN 301
++N
Sbjct: 339 HKN 341
>pir||T51252 dTDPglucose 4,6-dehydratase (EC 4.2.1.46) [imported] - chickpea
gi|6469141|emb|CAB61752.1| dTDP-glucose 4-6-dehydratase
[Cicer arietinum]
Length = 346
Score = 229 bits (583), Expect = 3e-59
Identities = 114/122 (93%), Positives = 116/122 (94%)
Frame = -2
Query: 669 IAQALRGEPLTVQSPGTQTRSFCYVSDLVDGLIRLMEGSDTGPINLGNPGEFTMTELAET 490
IAQALRGE LTVQSPGTQTRSFCYVSDLVDGLIRLM GSDTGPINLGNPGEFTM ELAET
Sbjct: 223 IAQALRGESLTVQSPGTQTRSFCYVSDLVDGLIRLMGGSDTGPINLGNPGEFTMLELAET 282
Query: 489 VKELINPKVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRLRLGV 310
VKELINP VEIK VENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLME DFRLRLGV
Sbjct: 283 VKELINPNVEIKTVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEGDFRLRLGV 342
Query: 309 NQ 304
++
Sbjct: 343 DK 344
>ref|NP_200737.1| dTDP-glucose 4-6-dehydratase - like protein; protein id:
At5g59290.1, supported by cDNA: 6701., supported by
cDNA: gi_14030702, supported by cDNA: gi_14595665,
supported by cDNA: gi_20334715 [Arabidopsis thaliana]
gi|9759250|dbj|BAB09774.1| dTDP-glucose 4-6-dehydratase
[Arabidopsis thaliana]
gi|14595666|gb|AAK70882.1|AF387789_1 UDP-glucuronic acid
decarboxylase [Arabidopsis thaliana]
gi|21594196|gb|AAM65979.1| dTDP-glucose
4-6-dehydratase-like protein [Arabidopsis thaliana]
Length = 342
Score = 227 bits (578), Expect = 1e-58
Identities = 109/123 (88%), Positives = 117/123 (94%)
Frame = -2
Query: 669 IAQALRGEPLTVQSPGTQTRSFCYVSDLVDGLIRLMEGSDTGPINLGNPGEFTMTELAET 490
IAQALRGE LTVQ PGTQTRSFCYVSD+VDGLIRLMEG+DTGPIN+GNPGEFTM ELAET
Sbjct: 220 IAQALRGEALTVQKPGTQTRSFCYVSDMVDGLIRLMEGNDTGPINIGNPGEFTMVELAET 279
Query: 489 VKELINPKVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRLRLGV 310
VKELINP +EIKMVENTPDDPRQRKPDI+KAKE+LGWEPKVKLR+GLPLMEEDFRLRL V
Sbjct: 280 VKELINPSIEIKMVENTPDDPRQRKPDISKAKEVLGWEPKVKLREGLPLMEEDFRLRLNV 339
Query: 309 NQN 301
+N
Sbjct: 340 PRN 342
>gb|AAK53026.1|AF375442_1 AT5g59290/mnc17_180 [Arabidopsis thaliana]
gi|20334716|gb|AAM16219.1| AT5g59290/mnc17_180
[Arabidopsis thaliana]
Length = 342
Score = 227 bits (578), Expect = 1e-58
Identities = 109/123 (88%), Positives = 117/123 (94%)
Frame = -2
Query: 669 IAQALRGEPLTVQSPGTQTRSFCYVSDLVDGLIRLMEGSDTGPINLGNPGEFTMTELAET 490
IAQALRGE LTVQ PGTQTRSFCYVSD+VDGLIRLMEG+DTGPIN+GNPGEFTM ELAET
Sbjct: 220 IAQALRGEALTVQKPGTQTRSFCYVSDMVDGLIRLMEGNDTGPINIGNPGEFTMVELAET 279
Query: 489 VKELINPKVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRLRLGV 310
VKELINP +EIKMVENTPDDPRQRKPDI+KAKE+LGWEPKVKLR+GLPLMEEDFRLRL V
Sbjct: 280 VKELINPSIEIKMVENTPDDPRQRKPDISKAKEVLGWEPKVKLREGLPLMEEDFRLRLNV 339
Query: 309 NQN 301
+N
Sbjct: 340 PRN 342
>dbj|BAB40967.1| UDP-D-glucuronate carboxy-lyase [Pisum sativum]
Length = 346
Score = 227 bits (578), Expect = 1e-58
Identities = 112/123 (91%), Positives = 116/123 (94%)
Frame = -2
Query: 669 IAQALRGEPLTVQSPGTQTRSFCYVSDLVDGLIRLMEGSDTGPINLGNPGEFTMTELAET 490
IAQALR E LTVQSPGTQTRSFCYVSDLVDGLIRLM GSDTGPINLGNPGEFTM ELAET
Sbjct: 223 IAQALRDESLTVQSPGTQTRSFCYVSDLVDGLIRLMGGSDTGPINLGNPGEFTMLELAET 282
Query: 489 VKELINPKVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRLRLGV 310
VKELINP VEIK+VENTPDDPRQRKPDITKA+ELLGWEPKVKLRDGLPLME DFRLRLG+
Sbjct: 283 VKELINPNVEIKIVENTPDDPRQRKPDITKAQELLGWEPKVKLRDGLPLMEGDFRLRLGI 342
Query: 309 NQN 301
+N
Sbjct: 343 EKN 345
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 578,795,883
Number of Sequences: 1393205
Number of extensions: 12757072
Number of successful extensions: 36136
Number of sequences better than 10.0: 611
Number of HSP's better than 10.0 without gapping: 34829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35963
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
