Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004337A_C01 KMC004337A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL08277.1| AT5g61020/maf19_20 [Arabidopsis thaliana] 87 2e-16
ref|NP_568932.1| putative protein; protein id: At5g61020.1, supp... 87 2e-16
dbj|BAB10365.1| contains similarity to unknown protein~gb|AAD106... 87 2e-16
ref|NP_564692.1| expressed protein; protein id: At1g55500.1, sup... 85 6e-16
gb|AAN06837.1| Putative RNA-binding protein [Oryza sativa (japon... 82 3e-15
>gb|AAL08277.1| AT5g61020/maf19_20 [Arabidopsis thaliana]
Length = 495
Score = 86.7 bits (213), Expect = 2e-16
Identities = 48/95 (50%), Positives = 59/95 (61%), Gaps = 2/95 (2%)
Frame = -3
Query: 542 RDTQEVKFEKGIQIIKIFKEHSSKTSILDDFGFYEAREKATQERKSKEQQFPKQ--VNKA 369
RDTQEVK E+GI++IKIFK+H+SKT ILDDF FYE R+K QERKSK Q KQ V A
Sbjct: 381 RDTQEVKLEQGIKVIKIFKDHASKTCILDDFEFYENRQKIIQERKSKHLQIKKQTLVANA 440
Query: 368 SDITIGTVTLPKSLDATLTNESATADAAEGRVNAE 264
+ + L K ++T +E A A V E
Sbjct: 441 DKGVMSKINLVKPQESTTASEDAAALGVAAEVTKE 475
>ref|NP_568932.1| putative protein; protein id: At5g61020.1, supported by cDNA:
gi_15912286 [Arabidopsis thaliana]
Length = 495
Score = 86.7 bits (213), Expect = 2e-16
Identities = 48/95 (50%), Positives = 59/95 (61%), Gaps = 2/95 (2%)
Frame = -3
Query: 542 RDTQEVKFEKGIQIIKIFKEHSSKTSILDDFGFYEAREKATQERKSKEQQFPKQ--VNKA 369
RDTQEVK E+GI++IKIFK+H+SKT ILDDF FYE R+K QERKSK Q KQ V A
Sbjct: 381 RDTQEVKLEQGIKVIKIFKDHASKTCILDDFEFYENRQKIIQERKSKHLQIKKQTLVANA 440
Query: 368 SDITIGTVTLPKSLDATLTNESATADAAEGRVNAE 264
+ + L K ++T +E A A V E
Sbjct: 441 DKGVMSKINLVKPQESTTASEDAAALGVAAEVTKE 475
>dbj|BAB10365.1| contains similarity to unknown
protein~gb|AAD10646.1~gene_id:MAF19.3 [Arabidopsis
thaliana] gi|17529254|gb|AAL38854.1| unknown protein
[Arabidopsis thaliana] gi|20465483|gb|AAM20201.1|
unknown protein [Arabidopsis thaliana]
Length = 493
Score = 86.7 bits (213), Expect = 2e-16
Identities = 48/95 (50%), Positives = 59/95 (61%), Gaps = 2/95 (2%)
Frame = -3
Query: 542 RDTQEVKFEKGIQIIKIFKEHSSKTSILDDFGFYEAREKATQERKSKEQQFPKQ--VNKA 369
RDTQEVK E+GI++IKIFK+H+SKT ILDDF FYE R+K QERKSK Q KQ V A
Sbjct: 379 RDTQEVKLEQGIKVIKIFKDHASKTCILDDFEFYENRQKIIQERKSKHLQIKKQTLVANA 438
Query: 368 SDITIGTVTLPKSLDATLTNESATADAAEGRVNAE 264
+ + L K ++T +E A A V E
Sbjct: 439 DKGVMSKINLVKPQESTTASEDAAALGVAAEVTKE 473
>ref|NP_564692.1| expressed protein; protein id: At1g55500.1, supported by cDNA:
gi_15215791 [Arabidopsis thaliana]
gi|15215792|gb|AAK91441.1| At1g55500/T5A14_10
[Arabidopsis thaliana] gi|25090204|gb|AAN72251.1|
At1g55500/T5A14_10 [Arabidopsis thaliana]
Length = 549
Score = 84.7 bits (208), Expect = 6e-16
Identities = 42/68 (61%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Frame = -3
Query: 542 RDTQEVKFEKGIQIIKIFKEHSSKTSILDDFGFYEAREKATQERKSKEQQFPKQV--NKA 369
RDTQEVK E+G++++KIFKEH+SKT ILDDF FYEAR+K E+K+K+QQ KQV K
Sbjct: 478 RDTQEVKLEQGLKVVKIFKEHNSKTCILDDFSFYEARQKTILEKKAKQQQSQKQVWEGKT 537
Query: 368 SDITIGTV 345
+D GTV
Sbjct: 538 NDEKPGTV 545
>gb|AAN06837.1| Putative RNA-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 716
Score = 82.4 bits (202), Expect = 3e-15
Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Frame = -3
Query: 542 RDTQEVKFEKGIQIIKIFKEHSSKTSILDDFGFYEAREKATQERKSKEQQFPKQVNKASD 363
RDTQEV ++GIQ++KIFKEH SKTSILDDF FYE R+K QE++ K+QQ KQV +
Sbjct: 593 RDTQEVNLDQGIQMLKIFKEHVSKTSILDDFAFYENRQKLMQEKRVKQQQIQKQVWDS-- 650
Query: 362 ITIGTVTLPKSLDATLTNESATA-DAAEGRVNAE-ELLERNGSTTVVEESAK 213
P S+ ++ATA VN E ++ NG+ VV +AK
Sbjct: 651 ------RAPSSVTGEKQQDAATAKPKLPNGVNGELKVPAENGTAPVVTYAAK 696
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 420,626,475
Number of Sequences: 1393205
Number of extensions: 8559010
Number of successful extensions: 25948
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 24516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25855
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
