Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004332A_C01 KMC004332A_c01
(498 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07871 miraculin homolog, root-knot nematode-induced - toma... 105 4e-22
pir||T03803 tumor-related protein, clone NF34 - common tobacco g... 104 5e-22
dbj|BAA05474.1| tumor-related protein [Nicotiana glauca x Nicoti... 104 6e-22
ref|NP_173228.1| lemir (miraculin), putative; protein id: At1g17... 100 2e-20
dbj|BAA82843.1| miraculin homologue [Solanum melongena] 92 2e-18
>pir||T07871 miraculin homolog, root-knot nematode-induced - tomato
gi|2654440|gb|AAC63057.1| Lemir [Lycopersicon
esculentum]
Length = 205
Score = 105 bits (261), Expect = 4e-22
Identities = 53/107 (49%), Positives = 73/107 (67%), Gaps = 3/107 (2%)
Frame = -3
Query: 496 TDLNIKSSLTNTTCAKAPVWKL--LKELSGVWFLATGGVEGNPGMATISNWFKIEKADKD 323
TDLNI S N+ C + WKL E +G +F+ GG +GNPG+ TISNWFKIEK D+D
Sbjct: 102 TDLNIIFS-ANSICVQTTQWKLDDFDETTGQYFITLGGDQGNPGVETISNWFKIEKYDRD 160
Query: 322 YVFSFCPSVCK-CQTLCRELGIYDYGGDKHLSLSDQVPPFRIMFKQA 185
Y +CP+VC C+ +CR++GI+ G + L+LSD PF++MFK+A
Sbjct: 161 YKLLYCPTVCDFCKVICRDIGIFIQDGVRRLALSD--VPFKVMFKKA 205
>pir||T03803 tumor-related protein, clone NF34 - common tobacco
gi|1762933|gb|AAC49969.1| tumor-related protein
[Nicotiana tabacum]
Length = 210
Score = 104 bits (260), Expect = 5e-22
Identities = 53/110 (48%), Positives = 75/110 (68%), Gaps = 3/110 (2%)
Frame = -3
Query: 496 TDLNIKSSLTNTTCAKAPVWKL--LKELSGVWFLATGGVEGNPGMATISNWFKIEKADKD 323
TDLNIK S + C + +WKL E +G +F+ GG EGNPG TISNWFKIEK ++D
Sbjct: 102 TDLNIKFSAASI-CVQTTLWKLDDFDETTGKYFITIGGNEGNPGRETISNWFKIEKFERD 160
Query: 322 YVFSFCPSVCK-CQTLCRELGIYDYGGDKHLSLSDQVPPFRIMFKQA*VL 176
Y +CP+VC C+ +C+++GI+ G + L+LSD PF++MFK+A V+
Sbjct: 161 YKLVYCPTVCNFCKVICKDVGIFIQDGIRRLALSD--VPFKVMFKKAQVV 208
>dbj|BAA05474.1| tumor-related protein [Nicotiana glauca x Nicotiana langsdorffii]
Length = 125
Score = 104 bits (259), Expect = 6e-22
Identities = 52/107 (48%), Positives = 73/107 (67%), Gaps = 3/107 (2%)
Frame = -3
Query: 496 TDLNIKSSLTNTTCAKAPVWKL--LKELSGVWFLATGGVEGNPGMATISNWFKIEKADKD 323
TDLNIK S + C + +WKL E +G +F+ GG EGNPG TISNWFKIEK ++D
Sbjct: 22 TDLNIKFSAASI-CVQTTLWKLDDFDETTGKYFITIGGNEGNPGRETISNWFKIEKFERD 80
Query: 322 YVFSFCPSVCK-CQTLCRELGIYDYGGDKHLSLSDQVPPFRIMFKQA 185
Y +CP+VC C+ +C+++GI+ G + L+LSD PF++MFK+A
Sbjct: 81 YKLVYCPTVCNFCKVICKDVGIFIQDGIRRLALSD--VPFKVMFKKA 125
>ref|NP_173228.1| lemir (miraculin), putative; protein id: At1g17860.1, supported by
cDNA: gi_12083239, supported by cDNA: gi_13899080,
supported by cDNA: gi_15294165, supported by cDNA:
gi_20148400, supported by cDNA: gi_20453292 [Arabidopsis
thaliana] gi|25294073|pir||G86313 hypothetical protein
F2H15.9 - Arabidopsis thaliana
gi|9665064|gb|AAF97266.1|AC034106_9 Contains similarity
to a tumor-related protein from Nicotiana tabacum
gb|U66263 and contains a trypsin and protease inhibitor
PF|00197 domain. ESTs gb|AV561824, gb|T44961,
gb|H36186, gb|T45060, gb|N38006, gb|F19847 come from
this gene. [Arabidopsis thaliana]
gi|12083240|gb|AAG48779.1|AF332416_1 putative lemir
(miraculin) protein [Arabidopsis thaliana]
gi|13899081|gb|AAK48962.1|AF370535_1 Unknown protein
[Arabidopsis thaliana]
gi|15294166|gb|AAK95260.1|AF410274_1 At1g17860/F2H15_8
[Arabidopsis thaliana] gi|20148401|gb|AAM10091.1|
unknown protein [Arabidopsis thaliana]
gi|20453293|gb|AAM19885.1| At1g17860/F2H15_8
[Arabidopsis thaliana]
Length = 196
Score = 99.8 bits (247), Expect = 2e-20
Identities = 49/107 (45%), Positives = 71/107 (65%), Gaps = 3/107 (2%)
Frame = -3
Query: 496 TDLNIKSSLTNTTCAKAPVWKLLK--ELSGVWFLATGGVEGNPGMATISNWFKIEKADKD 323
TD+NIK S T+ +W+L E + WF++T GVEGNPG T+ NWFKI+K +KD
Sbjct: 98 TDVNIKFSPTS-------IWELANFDETTKQWFISTCGVEGNPGQKTVDNWFKIDKFEKD 150
Query: 322 YVFSFCPSVCK-CQTLCRELGIYDYGGDKHLSLSDQVPPFRIMFKQA 185
Y FCP+VC C+ +CR++G++ G + L+LSD P ++MFK+A
Sbjct: 151 YKIRFCPTVCNFCKVICRDVGVFVQDGKRRLALSD--VPLKVMFKRA 195
>dbj|BAA82843.1| miraculin homologue [Solanum melongena]
Length = 160
Score = 92.4 bits (228), Expect = 2e-18
Identities = 45/95 (47%), Positives = 63/95 (65%), Gaps = 3/95 (3%)
Frame = -3
Query: 496 TDLNIKSSLTNTTCAKAPVWKL--LKELSGVWFLATGGVEGNPGMATISNWFKIEKADKD 323
TDLNI S N+ C + WKL E +G +F+ GG +GNPG TISNWFKIEK ++D
Sbjct: 67 TDLNIIFS-ANSICVQTTQWKLDNFDETTGKYFITLGGNQGNPGRETISNWFKIEKFERD 125
Query: 322 YVFSFCPSVCK-CQTLCRELGIYDYGGDKHLSLSD 221
Y +CP+VC C+ +C+++GI+ G + L+LSD
Sbjct: 126 YKLVYCPTVCDFCKVICKDIGIFIQDGVRRLALSD 160
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,566,894
Number of Sequences: 1393205
Number of extensions: 8910964
Number of successful extensions: 22084
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 21594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22045
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
